Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1558 ATGCAGGTGGCTAGTGAGGCCTCAGGAGCCTTTTTCTGTTTAATTCTTCATTTGTTTTCTACCATCAAAATCACTGATCTGATGATGAATGGTGGAAGCAGCAGGAGCAGCAGGTTCCCATTCACACCATCACAGTGGCAAGAGCTTGAACACCAAGCACTCATCTACAAATACATGGCTTCCGGCATCTCCATCCCCCCTGATCTCCTCTTCTCCATCAAAAGAGGCTACCACCTTGACCACTCTAGGCTCTTCCCTCACCACCACCCTCCACAACACCGTGAGTACTTGTTATTTTTCTTCCTTATCTATGTATATGTATATGAACTTGTTCAAGTCATAACATACAAGTATGCTATGCATGCAGTTGGATGGAACTATCTGCAGATGGGTCTGGGAAGAAAGATAGACCCTGAACCAGGAAGATGCAGAAGAACCGATGGAAAAAAATGGAGATGCTCTAAGGAAGCATATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGCAAGAACCGTTCAAGAAAGCCTGTGGAACATCACCAGCAGCACCACCAACGAACACGGATGATGCTGCTGCTCCATCTTCTTCAACCACAACAACAATCTTATCAATCACCAACAACAATAACTCTCTCTCCCCTCTCTCATCTGCATCACTGTCCTCTCATCAACACCAACACCAACCCTCTTCAAGGTCCTCCAACTCCATTGGCTTCTCTTTTCAGGACAACAACGCTGCTCCTTTGTTTCTTGACACCCAGACCAACACCGACTGCAGAGAGGTATATTTATGGGCTGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACTGAACCTTCGGGAACAATGAGAAGCTTCTCTGCTTCGTCCATGGATGATTCATGGCAGCTGACACCACTCACCATAAGCTCCTCAACTTCTTCGAAGCAGAGGAGCTGCTCTGGCTTGTCCAATGAAAACAACAACGAGTACTCTTACTTGCAGCTTCACCACCATAACAACAACAACAACTCAAAGCAAAGAGAAGCAGAACAAGATCATGGTTGCTACATGGCTCTTGGGAAAGAAGAAGAGCCACATCATCAGAAGACCACCGTTCATCGTTTCTTCGATGAATGGCCTCACAAGAGTAGAGGAGGCTCATCCTGGCTTGATTTGGATGATAAATCTTCCACTACTCAGCTTTCCATTTCCATCCCCACATCCTCTCATGACTTCACAACCTTCATTTCAAGGAACACTAGAGATGGTTAA 1260 0.4587 MQVASEASGAFFCLILHLFSTIKITDLMMNGGSSRSSRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFSIKRGYHLDHSRLFPHHHPPQHREYLLFFFLIYVYVYELVQVITYKYAMHAVGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEHHQQHHQRTRMMLLLHLLQPQQQSYQSPTTITLSPLSHLHHCPLINTNTNPLQGPPTPLASLFRTTTLLLCFLTPRPTPTAERYIYGLKEEVDEHAFFTEPSGTMRSFSASSMDDSWQLTPLTISSSTSSKQRSCSGLSNENNNEYSYLQLHHHNNNNNSKQREAEQDHGCYMALGKEEEPHHQKTTVHRFFDEWPHKSRGGSSWLDLDDKSSTTQLSISIPTSSHDFTTFISRNTRDG* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1558 419 Pfam QLQ 40 73 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo16g1558 419 Pfam WRC 138 180 IPR014977 -
Amo16g1558 419 ProSiteProfiles QLQ domain profile. 40 75 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo16g1558 419 ProSiteProfiles WRC domain profile. 137 181 IPR014977 -
Amo16g1558 419 PANTHER - 36 406 IPR031137 GO:0005634|GO:0006351|GO:0032502
Amo16g1558 419 SMART QLQ_2 39 75 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo16g1558 419 PANTHER GROWTH-REGULATING FACTOR 6 36 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1558 Amo-Chr16 28851863 28853617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1558 27 183 GRF Transcription Factor Family AT3G13960 52.174 2.28e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Amo16g1558 WRC 9.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1558 - - ahf:112758812 456.447