Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1555 ATGGAAGAAGTTCAAGCAGCTCAACCTCAATCACTCGGGGAAGTTCCAGCAGAATATAGCGTCCCGCCGAAAGTTGATTCTGAAGTTAAAGTCCTTCACGAGAAGGTCACTAAGCAAGTAATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTTATTCATTACAGGGGTTGGTCTGAAAGCACCCTGCACAAGTTTGAAGACACGTGGCAAGAACAGCGACCAATTGAGATGGTATTAGGAAAAGAAAAGAAAGAAATGACTGGCTTGGCCATTGGTGTGGCAAACATGAAAGATGGTGAGCGTGCATTGCTACGTGTGGGTTGGGAATTAGGATATGGCGAGGAAGGAAGTTTTTCTTTCCCCAATGTTCCTCCCAGGGCAGATTTAGTTTATGAAGTTGAGCTTATTGGCTTTGATGAAACGAAAGAAGGAAAAGCTCGCAGCGATATGACTGTGGAGGAAAGGATTGGTGCAGCAGATCGTAGAAAGATGGATGGAAATGTTTTGTTTCAGCAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCATATATGGGAGATGACTTCATGTTTCAGCTGTTTGGGAAATATAGGGATATGGCTTTGGCTGTAAAGAACCCATGCCATCTTAACATGGCAGCTTGTCTGATTAAGCTGAACCGTTATGAAGAAGCTATAGGACAATGTACAATTGTACTGACTGAGGATGAAAACAATGTCAAGGCTCTATTTAGGAGAGGCAAGTCTAGGGCAGCACTTGGGCAAATAGATCCTGCCAAGGAAGATTTTCAAAAGGCACGCAAGTATGCCCCTGAAGACAAAGCGATTGCAAGAGAATTAAGGTTGCTTGCTGAACACGACAAAGTTGTTTATCAAAAGCAGAAAGAACTATACAAAGGAATCTTTGGACCAAGGCCAGATCCAAGATCTAGTAATAAGCGAAGTGGTAACTTGCTGATTCTCATTTGGCAGTGGTTGCTTTCACTATTTTATGGCCTTGTTAATCTCTTCAAGCGTAAAAGCCCCAAATCTGACTAA 1065 0.4263 MEEVQAAQPQSLGEVPAEYSVPPKVDSEVKVLHEKVTKQVIKEGHGQKPSKYSTCFIHYRGWSESTLHKFEDTWQEQRPIEMVLGKEKKEMTGLAIGVANMKDGERALLRVGWELGYGEEGSFSFPNVPPRADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNVLFQQEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCTIVLTEDENNVKALFRRGKSRAALGQIDPAKEDFQKARKYAPEDKAIARELRLLAEHDKVVYQKQKELYKGIFGPRPDPRSSNKRSGNLLILIWQWLLSLFYGLVNLFKRKSPKSD* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1555 354 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 141 IPR001179 GO:0003755
Amo16g1555 354 SUPERFAMILY FKBP-like 22 143 - -
Amo16g1555 354 ProSiteProfiles TPR repeat profile. 249 282 IPR019734 GO:0005515
Amo16g1555 354 Gene3D Tetratricopeptide repeat domain 146 277 IPR011990 GO:0005515
Amo16g1555 354 SMART tpr_5 249 282 IPR019734 GO:0005515
Amo16g1555 354 SMART tpr_5 164 197 IPR019734 GO:0005515
Amo16g1555 354 SMART tpr_5 215 248 IPR019734 GO:0005515
Amo16g1555 354 SUPERFAMILY TPR-like 156 295 IPR011990 GO:0005515
Amo16g1555 354 Pfam Tetratricopeptide repeat 251 281 IPR019734 GO:0005515
Amo16g1555 354 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 17 312 - -
Amo16g1555 354 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 144 IPR001179 GO:0003755
Amo16g1555 354 Gene3D - 20 145 IPR046357 GO:0003755
Amo16g1555 354 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP42-RELATED 17 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1555 Amo-Chr16 28819670 28823315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1555 5 312 Calmodulin-binding Proteins AT3G25230 31.579 2.04e-33 128