Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1550 ATGGCAACTCAAGGTCAAGTCATTACTTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCTTTGTCCATCGAAGACGTTCAGGTGGCTCCACCGCAAGCCGGCGAGGTTCGAGTCAAGATCCTCTACACTGCTCTCTGTCACACCGATGCTTACACCTGGAGCGGAAAGGATCCTGAAGGTCTCTTCCCTTGTATCCTTGGCCATGAAGCTGCTGGAATTGTGGAGAGTGTTGGAGAAGGTGTTACTAATGTGCAGCCTGGAGATCATGTTATTCCATGTTACCAGGCTGAATGTGGTGAGTGCAAGTTCTGCAAATCTGGAAAAACGAACCTCTGTGGGAAGGTTCGTTCCGCCACTGGAGTTGGAGTGATGCTTAGCGACCGCAAAAGTCGTTTCTCTATCAATGGGAAGACCATTTATCATTTCATGGGAACTTCCACCTTCAGCCAGTACACTGTTGTTCATGATGTAAGTGTGGCTAAGATTGATCCAGCTGCTCCTTTGGATAAAGTTTGTCTTCTTGGTTGCGGTGTTCCAACCGGGCTTGGAGCTGTATGGAACACTGCAAAAGTTGAACCAGGGTCAATTGTTGCTGTTTTTGGCCTTGGAACTGTTGGTCTTGCTGTTGCAGAGGGTGCAAAAAGTGCCGGTGCATCTCGTATTATTGGCATTGATATCGATAGCAAGAAATTTGATACAGCGAAGAACTTTGGAGTCACCGAGTTTATTAATCCTAAAGAACACGATAAACCAATTCAGCAGGTCATAGTTGATCTTACAGATGGCGGAGTTGATTATAGCTTTGAGTGCATTGGGAATGTCTCCGTCATGAGAGCTGCTCTGGAATGCTGCCACAAGGGCTGGGGAACATCAGTTATCGTGGGTGTTGCAGCATCGGGCCAAGAGATATCTACCCGCCCTTTCCAATTGGTGACGGGGCGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGGTCACAAGTGCCTTGGCTTGTGGAGAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCACAATCTGACGCTCGGCGAGATCAACAAGGCTTTCGATCTTATGCACGGAGGAGGATGTCTCCGTTGTGTTCTTTCAACAGATGCATGA 1140 0.4807 MATQGQVITCKAAVAWEPNKPLSIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTNVQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRSATGVGVMLSDRKSRFSINGKTIYHFMGTSTFSQYTVVHDVSVAKIDPAAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDTAKNFGVTEFINPKEHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLGEINKAFDLMHGGGCLRCVLSTDA* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1550 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Amo16g1550 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Amo16g1550 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Amo16g1550 379 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 3 378 - -
Amo16g1550 379 Gene3D - 182 320 - -
Amo16g1550 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Amo16g1550 379 Gene3D - 13 372 - -
Amo16g1550 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Amo16g1550 379 PANTHER ALCOHOL DEHYDROGENASE 3 378 - -
Amo16g1550 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Amo16g1550 379 Pfam Zinc-binding dehydrogenase 206 328 IPR013149 -
Amo16g1550 379 SUPERFAMILY GroES-like 3 198 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1550 Amo-Chr16 28722610 28725939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1550 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.911 1.27e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1550 K00121 - fve:101306577 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1550 16 28722610 28725939 Amo06g0324 06 4695279 4698623 hybridization
Amo16g1550 16 28722610 28725939 Amo12g0908 12 20236346 20241020 PCT
Amo12g0908 12 20236346 20241020 Amo16g1550 16 28722610 28725939 PCT