Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1546 ATGTCTAATGGGAGCCTAGAAACTTTGTTGCACAACACTATTGAAGATAGCGAGTTCACAAATATGAGTCTGAACCTTATGCAAAGGGTAAATATTGCTCTTGATGTAACTTTTGTGTTGGATTATATTCATAATGATTCAGGAGAAGCCGTAATTCATTGTGATATTAAGCCTGGCAATGTGCTTCTTGATGATGATATTGTTTTCCACTTGGGAGACTTTGGTCTAACTAGACTTGTTCAGTTGTTCAAGGGGACAAAAACTATTCTACTAGAACCATCGGATATGTTCCACCAAAGTATGGAACAGGTGGGTCAGTATCACCACAAGAAGACATTTATAACTATGAAATTCTTCTTTTGA 363 0.3664 MSNGSLETLLHNTIEDSEFTNMSLNLMQRVNIALDVTFVLDYIHNDSGEAVIHCDIKPGNVLLDDDIVFHLGDFGLTRLVQLFKGTKTILLEPSDMFHQSMEQVGQYHHKKTFITMKFFF* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1546 120 Gene3D Transferase(Phosphotransferase) domain 1 1 110 - -
Amo16g1546 120 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 84 - -
Amo16g1546 120 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1546 120 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 1 84 - -
Amo16g1546 120 SUPERFAMILY Protein kinase-like (PK-like) 1 84 IPR011009 -
Amo16g1546 120 Pfam Protein kinase domain 2 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1546 120 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1546 Amo-Chr16 28609896 28610536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1546 1 83 Receptor kinase-like Gene Family AT3G47570 50.000 4.54e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo16g1546 Pkinase 1.2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1546 - - ahf:114924118 184.111