Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1535 ATGTCTACAACACTACCTTCTTCTTCTTCTTCTGTTGGATCGTCTCATACCCTTTTCAATGAGATCCTTTCTTTGCCAGTTCTGGAACTTGTAGCAACGTGTGCCAACTTGGCACTGCTGCTTGTGTTTCTCATTGTTATCTTTTCAAGAAAGGTGCTTGGGAACGTGGGAAGTGTTAGATATGACAATAAGGATGATATTGCAAGCAATGGTGGCGCAGTTAGTCCTAGAATTGTTGATGCACAAACACATGAAGTTAGGATTGGTACATGGTTCAAGCTTTCGGTCTTGTCTTGTCTCTATGTTCTGTTGGTGCAACTTGTGGTGTTGGGTTTTGATGTTGTAGCTTTGATTCAGGGAAAGGGTAATTTGTCTGTAATTTTGTTGCCAGTTTCTCAGGGCTTGTCTTGGATTGTGTTGAGCTTCTTGGCTTTAAATTGCAAGGCTCAGAGGCTTGATAGGTTTCCATTTTTGTTGAGAGTTTGGTGGAGTGTGTCATTTGTTATTTGCTTGTGCACTTTGTATGTTGATGGGAGAGGGTTATGGGATGAAGGTTACAAGCATTTGCAGTCCCATGTGGTGGCGAATTTTGCTGCCACGCCTGCACTTGCCTTCTTGTGTATTGTTGCGGCTAGGGGTGTTACTGGTATTGAAGTCTGTGGGGATTCGGATTTTCGAGAGCCGTTGCTTGCTGAAGAAGAATCAGGGTGTGTGAAGGTTACTCCATACAGTGATGCTGGAATTTTTAGCCTGGCTACTCTGTCTTGGCTGAACCCAATTCTTTCCCTTGGCGCAAGGCGACCATTGGAGCTTAAGGACATTCCCCTAGTGGCACGAAAAGATCGAGCTAAGACAAATTACAAGATTTTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAATCCGTCCGGACAGCCTTCGTTAGCTTGGGCACTTCTCAGATCATTTTGGAAGGAAGCAGCTTGGAATGCCATCTTTGCTGGTTTGAATACTCTTGTTTCTTATGTTGGTCCTTACATGGTAAGCTACTTTGTTGATTACTTGAGTGGCAAACAAAGTTATCCGAACGAGGGCTATGTCCTCGCTGGGATCTTCTTCGTGGCGAAGCTTGTTGAGACCTTTACAACTCGTCAATGGTATCTAGGAGTGGATATCTTGGGCATGCATGTTAGATCAGCTCTAACAGCGATGGTGTATCGAAAGGGGCTTAGACTCTCGAGCTTAGCGARGCAAAGTCACACAAGTGGAGAGATTGTTAACTACATGGCTGTAGATGTTCAAAGAGTAGGGGACTACTCTTGGTACCTTCATGATATGTGGATGCTTCCTATGCAGATTGTTCTTGCCCTTCTAATCTTGTACAAGAACGTTGGAATTGCTTGTATTGCAACACTGATTGCTACCATCATTTCAATTGTTGTCACTGTTCCAGTAGCTAGGATCCAAGAAGATTATCAAGACAAGTTAATGGCTGCAAAAGATGAAAGGATGCGAAAAACATCTGAGTGCTTAAGGAACATGAGGATTCTCAAGTTGCAAGCTTGGGAAGACAGGTATCAAATAAAGTTAGAGGAGATGCGTGGAGTCGAGTTCAAATGGCTTCGAAAAGCGTTGTACTCGCAAGCTTTCATAACATTCATATTCTGGAGCTCCCCCATTTTTGTTTCAGCTGTCACTTTCGCTACATGCATATTGCTGGGTGGAGAGTTGACTGCAGGTGGTGTGCTTTCTGCTTTGGCTACTTTTAGAATCCTCCAAGAACCTCTCAGGAATTTTCCGGACTTGGTTTCAACAATGGCTCAGACTAAGGTTTCGATTGATCGAATATCTTCTTTCCTGCTTGAGGAAGAGTTGCAGGAAGATGCAACTATTGTCTTACCTCATGGAATCTCTAATGTTGCAGTAGAAATTAAGGATGGTATCTTCTGTTGGGACCCTTCATCATCTTCTAGACCAACTCTATCAGGGATTCATATGAAGGCCGAAAAAGGAATGCGTGTGGCTGTTTGTGGTATGGTTGGTTCCGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCTAAGCGTTCCGGCGAAGTAAGGGTGTGCGGCTTGTCTGCATATGTCTCGCAATCAGCATGGATACAGTCTGGAAACATAGAGGAAAATATTCTGTTTGGAAGCCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCTCTTAAGAAGGACTTGGAGCTTTTCTCACATGGTGATCAAACAATTATTGGTGATAGAGGCATAAACCTGAGTGGTGGCCAGAAGCAGCGTGTTCAGCTCGCACGAGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTTAGTGCAGTTGATGCTCACACCGGATCAGAATTGTTTAGGGAGTATATATTGACAGCACTAGCAAATAAAACAGTAATCTATGTGACACATCAAGTTGAATTTCTTCCTGCTGCTGATTTGATACTGGTTCTCAAAGAAGGCTGCATCATACAAGCTGGAAAATATGATGATCTCTTACAAGCAGGAACAGATTTTAATGCTCTAGTTTCTGCTCACCATGAAGCCATAGAGGCTATGGAAATTCCTAGTTTCTCATCTGAAGATTCCGAAGAACATTTATCCTTAAATGCATTGGTTATATCCAGTAAGAAGTCTATTTGTTCCACAAATGATATTGACAATTTGGCAAAGGAACTGCAAGAGGGATCATCGAATTCAGATCAAAAAGCGATTAAGGAGAAGAAGAAAACAAAACGCTCAAGGAAAAAGCAACTAGTTCAAGAAGAGGAGAGGGTCAGAGGTAGAATCAGCATGAAGGTTTATTTGTCATACATGGCAGCAGCATATAAAGGGTTATTGATTCCTCTCATAATCATGGCGCAAACGTTATTTCAGTTTCTACAGATTGCTAGTAATTGGTGGATGGCTTGGGCTAACCCACAAACTGAAGGAGACCTGCCGAAAGTATCTCCCACAGAGCTTCTTGTCGTTTACATGGCCCTCGCTTTCGGCAGCTCCTGCTTTATATTTGTAAGGGCTATTCTGGTGGCTACATTTGGCCTTGCAGCAGCTCAGAAGCTGTTCTTGAAGATGCTTAGAAGTGTTTTCCATGCACCAATGTCTTTCTTCGACTCTACACCTGCCGGACGGATCTTGAATCGTGTATCAGTTGATCAAAGTGTTGTGGATCTTGACATTCCTTTCAGACTCGGTGGCTTCGCTTCGACAAYAATACAACTTATTGGTATTGTTGGTGTGATGACAGAAGTCACATGGCAAGTTTTGCTCCTAGTTATCCCAATGGGTGTTGCTTGTTTGTGGATGCAGAAATACTATATGGCTTCCTCGAGGGAACTAGTCCGAATTGTAAGCATCCAGAAGTCTCCAATYATAAATCTTTTTGCTGAATCAATTGCTGGAGCWTCTACAATAAGAGGATTTGGACAAGAAAAGAGGTTTATGAAGCGAAATCTCTATCTTCTAGATTGCTTTGCTCGGCCATTCTTCTGCAGTCTTGCTGCTATCGAATGGCTCTGCTTGCGGATGGAGTTACTGTCAACTTTTGTATTTGCTTTCTGCATGGTATTACTTGTAAGCTTCCCCCATGGAAGCATTGATCCCAGCATGGCTGGACTTGCTGTGACTTATGGACTCAATTTGAATGCACGTTTATCGAGATGGATACTTAGCTTCTGCAAACTCGAAAATAAAATCATTTCTATTGAAAGAATTTACCAATACAGTCAAATTCCAAGTGAAGCACCAGCAATCATTGAAGATTTTCGCCCTCCACCCTCATGGCCCGAAAATGGAACAATTGAAATAATTGATCTGAAGGTGCGGTACAAGGAGAATCTTCCTGTGGTACTTCATGGAGTGTCATGCACATTTCCAGGCGGAAAAAAGATCGGAATAGTTGGACGTACCGGTAGTGGCAAATCAACTTTAATTCAGGCATTGTTTCGGTTGATTGAACCATCTGATGGGAGGATACTTATAGACAACATTGATATTTTACATATTGGTCTTCATGATCTTAGGAGTCATCTAAGTATCATACCACAAGATCCAACCTTATTTGAAGGGACCATCCGTGGCAATCTTGATCCTCTTGAGGAGCACTCTGATCAACACATCTGGGAGGCATTGGACAAGTCTCAACTTGGAGATGTTATCCGTGAAAAGGACCAAAAGCTTGACACACCAGTGCTGGAAAATGGAGACAATTGGAGCGTAGGACAGCGGCAACTTGTTTCCCTAGGCCGAGCTCTTCTGAAGCAATCAAAAATACTTGTACTCGATGAAGCAACAGCATCAGTTGATACTGCCACTGATAATCTTATCCAGAAGATTATCCGTGATGAGTTTAAAGATTGTACTGTCTGCACCATTGCGCATCGCATTCCAACCGTTATAGACAGTGATCTTGTTCTAGTACTTAGTGATGGTGTGTCACTGCATTGCCATACACATTATATTATTTGTTTTGTGCTTGCTAATAAAGTTATGTTTGTTTGTTTTATTCTTCACACAGGTAGAGTTGCAGAATTCGACACTCCATCGCGACTATTAGAGGATAAAACCTCCATGTTTTTGAAGTTGGTGGCGGAGTATTCGTCAAGGTCAAGTGGCATCCCAGCAGGATAG 4671 0.4243 MSTTLPSSSSSVGSSHTLFNEILSLPVLELVATCANLALLLVFLIVIFSRKVLGNVGSVRYDNKDDIASNGGAVSPRIVDAQTHEVRIGTWFKLSVLSCLYVLLVQLVVLGFDVVALIQGKGNLSVILLPVSQGLSWIVLSFLALNCKAQRLDRFPFLLRVWWSVSFVICLCTLYVDGRGLWDEGYKHLQSHVVANFAATPALAFLCIVAARGVTGIEVCGDSDFREPLLAEEESGCVKVTPYSDAGIFSLATLSWLNPILSLGARRPLELKDIPLVARKDRAKTNYKILNSNWERLKAENPSGQPSLAWALLRSFWKEAAWNAIFAGLNTLVSYVGPYMVSYFVDYLSGKQSYPNEGYVLAGIFFVAKLVETFTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSLAXQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPMQIVLALLILYKNVGIACIATLIATIISIVVTVPVARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYQIKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFATCILLGGELTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSIDRISSFLLEEELQEDATIVLPHGISNVAVEIKDGIFCWDPSSSSRPTLSGIHMKAEKGMRVAVCGMVGSGKSSFLSCILGEIPKRSGEVRVCGLSAYVSQSAWIQSGNIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYILTALANKTVIYVTHQVEFLPAADLILVLKEGCIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMEIPSFSSEDSEEHLSLNALVISSKKSICSTNDIDNLAKELQEGSSNSDQKAIKEKKKTKRSRKKQLVQEEERVRGRISMKVYLSYMAAAYKGLLIPLIIMAQTLFQFLQIASNWWMAWANPQTEGDLPKVSPTELLVVYMALAFGSSCFIFVRAILVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFASTXIQLIGIVGVMTEVTWQVLLLVIPMGVACLWMQKYYMASSRELVRIVSIQKSPIINLFAESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIIEDFRPPPSWPENGTIEIIDLKVRYKENLPVVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPSDGRILIDNIDILHIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDQHIWEALDKSQLGDVIREKDQKLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRDEFKDCTVCTIAHRIPTVIDSDLVLVLSDGVSLHCHTHYIICFVLANKVMFVCFILHTGRVAEFDTPSRLLEDKTSMFLKLVAEYSSRSSGIPAG* 1557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1535 1556 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 964 1234 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo16g1535 1556 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1281 1544 IPR003439 GO:0005524
Amo16g1535 1556 Gene3D ABC transporter type 1, transmembrane domain 293 614 IPR036640 GO:0005524|GO:0016021
Amo16g1535 1556 Gene3D ABC transporter type 1, transmembrane domain 923 1262 IPR036640 GO:0005524|GO:0016021
Amo16g1535 1556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1272 1499 IPR027417 -
Amo16g1535 1556 CDD ABC_6TM_ABCC_D2 962 1256 IPR044726 GO:0140359
Amo16g1535 1556 ProSitePatterns ABC transporters family signature. 761 775 IPR017871 GO:0005524
Amo16g1535 1556 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 635 859 IPR003439 GO:0005524
Amo16g1535 1556 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 81 1496 - -
Amo16g1535 1556 Gene3D - 1264 1545 IPR027417 -
Amo16g1535 1556 CDD ABC_6TM_ABCC_D1 322 609 IPR044746 GO:0140359
Amo16g1535 1556 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1515 1554 - -
Amo16g1535 1556 SUPERFAMILY ABC transporter transmembrane region 310 615 IPR036640 GO:0005524|GO:0016021
Amo16g1535 1556 CDD ABCC_MRP_domain1 635 835 - -
Amo16g1535 1556 Gene3D - 615 877 IPR027417 -
Amo16g1535 1556 SMART AAA_5 663 844 IPR003593 -
Amo16g1535 1556 SMART AAA_5 1307 1492 IPR003593 -
Amo16g1535 1556 Coils Coil 919 939 - -
Amo16g1535 1556 MobiDBLite consensus disorder prediction 911 932 - -
Amo16g1535 1556 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 324 601 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo16g1535 1556 Coils Coil 280 300 - -
Amo16g1535 1556 Pfam ABC transporter transmembrane region 967 1206 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo16g1535 1556 Pfam ABC transporter transmembrane region 325 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo16g1535 1556 Pfam ABC transporter 654 788 IPR003439 GO:0005524
Amo16g1535 1556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 631 858 IPR027417 -
Amo16g1535 1556 SUPERFAMILY ABC transporter transmembrane region 962 1261 IPR036640 GO:0005524|GO:0016021
Amo16g1535 1556 Pfam ABC transporter 1298 1446 IPR003439 GO:0005524
Amo16g1535 1556 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 81 1496 - -
Amo16g1535 1556 CDD ABCC_MRP_domain2 1279 1528 - -
Amo16g1535 1556 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1515 1554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1535 Amo-Chr16 28383979 28391325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1535 635 852 Calmodulin-binding Proteins AT2G36910 31.197 6.91e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1535 - - gmx:100790550 2501.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1535 16 28383979 28391325 Amo06g0316 06 4605693 4613696 hybridization
Amo16g1535 16 28383979 28391325 Amo12g0871 12 19203501 19211517 PCT
Amo12g0871 12 19203501 19211517 Amo16g1535 16 28383979 28391325 PCT