Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1528 GTTCAGTTATTTCCAGAATCTACCGTTTCAAGACTACACTACTCAAATTGTTTCTCAGTGATCATGTCATCGAAAATGTCTGCACCCGCCGCCGTTGAACAGCCGACGGAGCCGCCGAAGTCAGTCAAGGAGAAAAAGCCCAAGCTTCCCAAGAAGCAGCCCAAAGAGGCCAAAACCGCTTCTCACCCTCCATATTTTCAGATGATTAAGGAGGCGTTGGTGGCTCTGAACGAGAAAGGCGGTTCGAGCCCTTACGCGATAGCYAAGTACATGGAGGAGAAGCACAAGGCGGTGCTGCCCGAGAATTTCAGGAAGATTCTTGCGTTGCAGCTCAAGAACCAAACCGCCAAAGGGAACCTCCTYAAGATCAAGGCCTCCTACAAGCTCTCCGGTGCCGCCAAGAAGGACAAGAAGGAAATCTCGATGAAGCAGCAGAARCCGCAGCAGCGCCCCAAGCGGAGTGCCTCCATGGCGGCGAAGGGTGGTGTTAAGAAGACGAAGAAGGTGTCGACGCCGGCAAAGCCGAAGCAGCCAAAGTCGCTAAAGTCTCCGGCAAAGAGGGCCAGGAAGGGCACTGCAGCTGCCTGA 588 0.5357 VQLFPESTVSRLHYSNCFSVIMSSKMSAPAAVEQPTEPPKSVKEKKPKLPKKQPKEAKTASHPPYFQMIKEALVALNEKGGSSPYAIAKYMEEKHKAVLPENFRKILALQLKNQTAKGNLLKIKASYKLSGAAKKDKKEISMKQQKPQQRPKRSASMAAKGGVKKTKKVSTPAKPKQPKSLKSPAKRARKGTAAA* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1528 195 MobiDBLite consensus disorder prediction 29 63 - -
Amo16g1528 195 PRINTS Histone H5 signature 75 92 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo16g1528 195 PRINTS Histone H5 signature 179 195 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo16g1528 195 PRINTS Histone H5 signature 48 69 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo16g1528 195 PANTHER HISTONE H1 33 193 - -
Amo16g1528 195 Gene3D - 56 147 IPR036388 -
Amo16g1528 195 MobiDBLite consensus disorder prediction 132 195 - -
Amo16g1528 195 MobiDBLite consensus disorder prediction 132 146 - -
Amo16g1528 195 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 61 131 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo16g1528 195 MobiDBLite consensus disorder prediction 38 58 - -
Amo16g1528 195 CDD H15 59 138 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo16g1528 195 PANTHER HISTONE H1 33 193 - -
Amo16g1528 195 Pfam linker histone H1 and H5 family 62 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo16g1528 195 SMART h15plus2 59 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo16g1528 195 SUPERFAMILY "Winged helix" DNA-binding domain 58 139 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1528 Amo-Chr16 28052593 28053295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1528 49 129 Single Myb Histone (SMH) Gene Family AT1G72740 35.802 7.39e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1528 K11275 - gmx:100500169 200.675