Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1512 ATGGCGCCAAATCCAAAGGTGGTAGCAGCCTATCGTGCAATGGCAAATCTTGGGATTCATGAATCAAAAGTGAAGCCAGTACTAAAGAAGCTCCTTAAGTTGTATGATAAAAACTGGGAGCTTATTGAAGAAGAGAACTATAGAGCTCTGGCAGATGCAATATTTGAGGAGGAGGAAAATCCGGTGCTGGAGCAAGAGCAGGAAAAGAAAAACAAGAGAGTTGATGAAGCAGAGTTAGATGATGAAGTGCAAGATCAGCCACTGCGACCTAAAAAGAGGTTGCGCTTGAGAGGTCCAGAGTTTCAGTCTTCAAATAATCAGATTAGCAGTGGTCCCAGTTCAGCTGCTTTTCCATTGAAAACTCCTAAATTAGAAGATGACACGGTACCTGGAAATGGTTCTATACTGCATGCTCAAAGTGCTGCAGCATTATCTGATGGAAATGGAATGATTGAAGCTCATCAAGTTCATTCACAAGAAGGCATTATTGACAAGGGAAAGAAACCTGTATCACCTCAAGTTACTCCCAGAGGAAGAAGATCTACATCGGATGGAGTGCCACCAGCAGTACTACCTAAAGAACCAGCAGTTGAACCGCTGAGCACTTTGTCTCCAAGAAGCAAAATGGCCCATCCTCTTGTATGGATCAAGCCCAAGGATGAGCCAATTGATGACGCACGAGATAATGAGGCTCCCATTTCAATGATTCTTCCTGAACCATCTAGTGGAAAGGATTCTTCAATGATGAATGGTGCAGCTGGACAGCAAGATTGTGACGACACTGTGGCATCACATTGCATAAATGATGAAGTTGCTGGTGAAGATAACCTCCGCTCTTCAAATGAAGATGCCCCTTCTACTGTAGAGATAGGCTCATCACCTATACAAGAGGAAGGATCTGCAAAGATAACAACACCAAACATCAGCATGCCAAAGGAATCTGAGTCACATGATGCTCTGGTTGCCGGAGGAAATGAAGATCCAGTTACACCTTGCATTTCAAATGGATCTGCCAATGTTAATTCTTATTCTTCCTTGCCCACTACTGAAATTCCAGTTTCTCTGCCCTGCCCGCGTGGTCTGGATGACACTTCACCAGTTCCCCAGGAGGTTGGAAATAATGATTGCTTAGCAAGTGATGATGGAAGGGAGCTAGTGGATCCTATATCTAATAATTCTCATAGTTTAGTTACTGTTCCAAAGAATCAGCTTACTACTAATGCTATAATGACTGTTCACGATGTTAATGACATAACAAAGGGTGAAGAAAAAGTGAAAATTTCATGGGTCAATAACATTACTGATGATTTCCCACCATCCTTTCATTACATACCCCGAAACCTTGTATTCCAAAATGCTTATGTTAGTATTTCTCTGTCTCGCATTGGGAATGAAGATTGCTGTTCTACTTGCATAGGCAATTGTGTCTTGTCTTCTGAATCATGTTCTTGTGCGAATAAAACTGGTGGTGGATTTGCCTACACTGCACAAGGCCTACTGAAGGAAGAGTTCTTGGATGAGTGCATTGTCATCAGCTGCAACCCTAAAAATTGTTTCTATTGTGAAGACTGCCCAGTTGAAAGATCAAAGAATGATGATTGTTCAGAACCATGTAAAGGACACTTAAGGAGGAAGTTTATTAAGGAATGCTGGAGTAAATGTGGCTGTGGTAAAAAATGTGGCAATCGGGTTGTCCAGCAAGGAATAACTTGCAACTTGCAGGTGTTTTTAACTTCTGAAGGAAAAGGTTGGGGTCTTCGGACGTTAGAGGACCTTCCCAAAGGGGCATTTGTATGTGAGTTTGTTGGAGAAATTCTAACCGTCAAAGAATTGCATGAGAGGAGCCTAAAATATCCCAAAAATAGGAAATATACATACCCAATTCTATTGGATGCAGATTGGGAATCAGGAGGTGTGGGGGATAAAGAAGCACTTTGCTTGTATGCAGCATCTTATGGAAATGCTGCTAGGTTTATTAATCACAGATGTTTAGATGCTAACTTGATTGAGATCCCCGTTGAAATTGAGGGCCCAGATCATCACTACTATCATCTTGCCTTATTCACATCCAGAGAAATAGCAGCACAGGAGGAGCTCACTTGGGATTATGGCATCAACTTCGATGATCATGATCAGCCTGTTGAGCTGTTTGGGTGCAAATGTGGAAGTAAATTCTGCAGGAATATGAAGCGATCAAGTAGATCCGCAAGATCGTTGGCTGCAAGATGA 2229 0.4217 MAPNPKVVAAYRAMANLGIHESKVKPVLKKLLKLYDKNWELIEEENYRALADAIFEEEENPVLEQEQEKKNKRVDEAELDDEVQDQPLRPKKRLRLRGPEFQSSNNQISSGPSSAAFPLKTPKLEDDTVPGNGSILHAQSAAALSDGNGMIEAHQVHSQEGIIDKGKKPVSPQVTPRGRRSTSDGVPPAVLPKEPAVEPLSTLSPRSKMAHPLVWIKPKDEPIDDARDNEAPISMILPEPSSGKDSSMMNGAAGQQDCDDTVASHCINDEVAGEDNLRSSNEDAPSTVEIGSSPIQEEGSAKITTPNISMPKESESHDALVAGGNEDPVTPCISNGSANVNSYSSLPTTEIPVSLPCPRGLDDTSPVPQEVGNNDCLASDDGRELVDPISNNSHSLVTVPKNQLTTNAIMTVHDVNDITKGEEKVKISWVNNITDDFPPSFHYIPRNLVFQNAYVSISLSRIGNEDCCSTCIGNCVLSSESCSCANKTGGGFAYTAQGLLKEEFLDECIVISCNPKNCFYCEDCPVERSKNDDCSEPCKGHLRRKFIKECWSKCGCGKKCGNRVVQQGITCNLQVFLTSEGKGWGLRTLEDLPKGAFVCEFVGEILTVKELHERSLKYPKNRKYTYPILLDADWESGGVGDKEALCLYAASYGNAARFINHRCLDANLIEIPVEIEGPDHHYYHLALFTSREIAAQEELTWDYGINFDDHDQPVELFGCKCGSKFCRNMKRSSRSARSLAAR* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1512 742 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 739 - -
Amo16g1512 742 MobiDBLite consensus disorder prediction 60 123 - -
Amo16g1512 742 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Amo16g1512 742 CDD SET_SETDB-like 439 704 - -
Amo16g1512 742 MobiDBLite consensus disorder prediction 63 98 - -
Amo16g1512 742 MobiDBLite consensus disorder prediction 158 200 - -
Amo16g1512 742 Coils Coil 60 80 - -
Amo16g1512 742 Gene3D - 1 60 IPR043017 -
Amo16g1512 742 Gene3D SET domain 397 715 IPR046341 -
Amo16g1512 742 ProSiteProfiles SET domain profile. 571 704 IPR001214 GO:0005515
Amo16g1512 742 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 739 - -
Amo16g1512 742 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 742 IPR025776 -
Amo16g1512 742 Pfam Pre-SET motif 418 563 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo16g1512 742 SUPERFAMILY SET domain 425 727 IPR046341 -
Amo16g1512 742 SMART preset_2 415 555 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo16g1512 742 MobiDBLite consensus disorder prediction 99 116 - -
Amo16g1512 742 SMART set_7 571 710 IPR001214 GO:0005515
Amo16g1512 742 Pfam SET domain 583 704 IPR001214 GO:0005515
Amo16g1512 742 ProSiteProfiles Pre-SET domain profile. 467 568 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1512 Amo-Chr16 27747671 27755444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1512 417 727 Su(var)3-9 homologs AT1G73100 30.395 2.18e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo16g1512 Pre-SET 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1512 - - gmx:100788602 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1512 16 27747671 27755444 Amo06g0307 06 4466056 4473946 hybridization
Amo19g1942 19 65280051 65299785 Amo16g1512 16 27747671 27755444 PCT
Amo09g1384 09 42886666 42899835 Amo16g1512 16 27747671 27755444 PCT