Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1505 ATGAAAGCACACCCTGCAAAGCAACTCAATAACATGGGGATGTCAGGAGCACTTCCTTCCTCGTTGGCCAGCCTTCCACCGTCTCTAGAAGATACATACTCCAAATTATCTGATTCACAGCCTGCTTTTGTGGAAAATGAGCTTACAACAAGACCTTTTACTCATTCAAGTTCTAGTGGAGTAGTTGGGCCTATGTTTTCTTCTTCTCCGGGATATTCAACCGATCTTCATCATTCATCCCTTTCACCTCATGATAAACAATCTAAAAATACTCATTTTTTGTCACCGACATTCGGTAACATTGCTTCGTTGCCATTACCTTATTCTTCAAATAATGGACCAATACCTTCGACCACACCAACACATTATTCCAAAGGAAACAGTGCTTCCTGGCATGCAGATTCCCTGAATAGCTTTCTTGATTTGCCCACTAGTACCCCCATTGACAGCAGTCAAGTAGAAAGCAGTGCCTGCAATATTATGGCATCTGAGGATTATTCTAAGCAAAATAATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGACGATGACACTTTGACTTCTAATTGGAATGATATTCTTGTTGACAACATTCAAGATCTTGAACCAAAGGTGGTGTTCCAGGTTCCAAAATCATCTTCACAATTTCCAGCAGCCCATCAACAACTACCTGCTTCATCTGGAGAAAATCATGTGGGTGCCACGCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGCCCCGGATGCGATGGACACCCGAGCTTCATGAGGCCTTTGTCGATGCTGTCAATCAACTAGGTGGGAGTGAAAGAGCTACTCCTAAGGGCGTGCTGAAACTCATGAAAGTTGAAGGACTAACTATATACCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGATCTTCTGAGAAAAAACTAGGTACCATTGAAGAGATGCCATCTTTAGATTTGAAGACTGGTATTGAAATCACTGAAGCTCTGCGAATGCAGATGGAGGTTCAGAAGCGCTTGCACGAGCAGCTTGAGATTCAAAGAAATCTACAGTTACGTATAGAAGAACAAGGAAGGTATCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGGTGGCATTGAACCATTCAAGGCATCATCATCTGCCATTGATAGTACATCTGGAGTGTCCTCTGATGCCATGAAAGATTCACCTGCCAAAAGTGAAATGGAAGCCATCCCAGTGGACCTTTGCAGTTCAGGGCCTCATCAAGCTAATGGCAATGCCACAGCTGAGAAAAAATCCCTGGAAGTGAGTGGGAAGCAAGATGCTCCCGAAGATCCTAAGCAACTTGCTTCTGAAAGTGAAGATAGTGGTCATCCCCCAAAGCGTCCGAGGACAGATGAGTGA 1413 0.4388 MKAHPAKQLNNMGMSGALPSSLASLPPSLEDTYSKLSDSQPAFVENELTTRPFTHSSSSGVVGPMFSSSPGYSTDLHHSSLSPHDKQSKNTHFLSPTFGNIASLPLPYSSNNGPIPSTTPTHYSKGNSASWHADSLNSFLDLPTSTPIDSSQVESSACNIMASEDYSKQNNWQEWADQLISDDDTLTSNWNDILVDNIQDLEPKVVFQVPKSSSQFPAAHQQLPASSGENHVGATPSSSANSAPAKPRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGSSEKKLGTIEEMPSLDLKTGIEITEALRMQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGGIEPFKASSSAIDSTSGVSSDAMKDSPAKSEMEAIPVDLCSSGPHQANGNATAEKKSLEVSGKQDAPEDPKQLASESEDSGHPPKRPRTDE* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1505 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 243 303 IPR017930 -
Amo16g1505 470 Pfam Myb-like DNA-binding domain 248 299 IPR001005 -
Amo16g1505 470 MobiDBLite consensus disorder prediction 212 247 - -
Amo16g1505 470 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 42 470 - -
Amo16g1505 470 MobiDBLite consensus disorder prediction 381 470 - -
Amo16g1505 470 Pfam MYB-CC type transfactor, LHEQLE motif 331 378 IPR025756 -
Amo16g1505 470 MobiDBLite consensus disorder prediction 387 402 - -
Amo16g1505 470 Gene3D - 245 304 - -
Amo16g1505 470 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 42 470 IPR044848 GO:0003700
Amo16g1505 470 MobiDBLite consensus disorder prediction 437 470 - -
Amo16g1505 470 MobiDBLite consensus disorder prediction 72 91 - -
Amo16g1505 470 MobiDBLite consensus disorder prediction 422 436 - -
Amo16g1505 470 MobiDBLite consensus disorder prediction 300 319 - -
Amo16g1505 470 SUPERFAMILY Homeodomain-like 244 300 IPR009057 -
Amo16g1505 470 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 246 300 IPR006447 GO:0003677
Amo16g1505 470 MobiDBLite consensus disorder prediction 212 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1505 Amo-Chr16 27692377 27698173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1505 1 412 G2-like Transcription Factor Family AT4G28610 45.843 9.52e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo16g1505 Myb_DNA-binding 1.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1505 - - gmx:100810560 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1505 16 27692377 27698173 Amo06g0305 06 4451472 4457267 hybridization