Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1503 ATGTCGTCGTCGAGGCCAAGCCAATCAAAGCTCCATCCAAACTCTGAGGAGTCCGGTAGTTCCTTTGACAACTCGAATTCGGTGCGGTTGTCTTCCGGTACAGCCAGTGGAGAAAACCAGCCAAGGTGTGACAGGGTTACAACAGCTTATCTTCATCATATGCAGAAGGGGAAGTTCGTCCAGCCCTTTGGGTGCTTGCTAGCTTTGGATGAGAAGACATTTAGGGTCATTGCATACAGTCAGAATGCATCTGAAATGCTTACCATGGTTAGCCATGCTGTCCCAAGTATTGGTGATCACCCTGCTCTTGCCATTGGCACCGACATTCGGACTATTTTCACGGCCTTAAGTGTTGCTGCTTTGCAAAAGGCCCTTGCAGTTCCGGAGGTTTCACTCCTTAACCCCATTCTAGTTCATTGCATGACTTCTGAGAATCCCTTCTATGAAATTGTCCATCGTGTTACCGGTAGTTTGATCATTGATTTTGAGCCTGTTAAGCCTCATGAAGGTGATGGCTTTAAATTTCATGAGGATGATCATGGGGAAGTAATTGCTGGGGTTGCAAAGCCAGGCCTTGAGCCATATCTGGATTTGCACTATCCAGCCACTGATATTCTCCAAGAGCTCCTCATAGTTTCCACTTGCCACTTGCAATATATGAATTCAATTGCTTCCCTAGTTATGGCAGTTGTGGTCAATGATCATGAAGATGGGGATGGCTCTGATGTTGCTCAGCCACAAAAGAGAAAGAGACATTGGGGTTTAGTAGTTTGCCATAACACTAATCCAAGGTTTGTTCCCTTTCCTCTAGGGTATTGTGAATTTTTGGCTCAAGTATTTGCCATCCATGTGAATAAGGAATTAGAGTTAGAATATCAGATTGTTGAGAAGAACATCCTGCGCACGCAGACACTCTTGTGCAATATGCTAATGCGAGATGCACCCTTTGGTATTGTATCACAGAGCACTAATATAATGGATCTTGTGAGATGTGATGGAGCAACACTCTTGTATAGAGACAAGGTATGGAGATTAGGTGTGGCTCCAAGTGAATCTCGCATAAGAGAGTTAGCTTTATGGCCCTCTAAGTGCCATAAGGACTCCACGGGTTTGAGTACAGATAGATTGTCTAATGCAGGCTTCCCAAGAGTTGCTGCTCTTGAAATCAGATGGGGTGGTGTAAAGCATGAACCTGGTGGAAGGGATGATCCTACAAAGATGAGTCCAAGATCATCATTCAAGGCTTTCTTGAAGTTGTGA 1260 0.4476 MSSSRPSQSKLHPNSEESGSSFDNSNSVRLSSGTASGENQPRCDRVTTAYLHHMQKGKFVQPFGCLLALDEKTFRVIAYSQNASEMLTMVSHAVPSIGDHPALAIGTDIRTIFTALSVAALQKALAVPEVSLLNPILVHCMTSENPFYEIVHRVTGSLIIDFEPVKPHEGDGFKFHEDDHGEVIAGVAKPGLEPYLDLHYPATDILQELLIVSTCHLQYMNSIASLVMAVVVNDHEDGDGSDVAQPQKRKRHWGLVVCHNTNPRFVPFPLGYCEFLAQVFAIHVNKELELEYQIVEKNILRTQTLLCNMLMRDAPFGIVSQSTNIMDLVRCDGATLLYRDKVWRLGVAPSESRIRELALWPSKCHKDSTGLSTDRLSNAGFPRVAALEIRWGGVKHEPGGRDDPTKMSPRSSFKAFLKL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1503 419 MobiDBLite consensus disorder prediction 395 419 - -
Amo16g1503 419 Gene3D - 177 205 IPR029016 -
Amo16g1503 419 Gene3D - 214 292 IPR029016 -
Amo16g1503 419 Gene3D PAS domain 57 176 - -
Amo16g1503 419 Pfam PAS fold 49 165 IPR013654 GO:0006355
Amo16g1503 419 PANTHER PHYTOCHROME A 173 207 - -
Amo16g1503 419 PANTHER PHYTOCHROME A 8 169 - -
Amo16g1503 419 Pfam Phytochrome region 301 387 IPR013515 GO:0006355|GO:0009584
Amo16g1503 419 Gene3D - 293 387 IPR043150 -
Amo16g1503 419 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 173 272 IPR016132 -
Amo16g1503 419 SUPERFAMILY PYP-like sensor domain (PAS domain) 55 167 IPR035965 -
Amo16g1503 419 MobiDBLite consensus disorder prediction 1 41 - -
Amo16g1503 419 PANTHER PHYTOCHROME A 213 387 - -
Amo16g1503 419 Coils Coil 285 305 - -
Amo16g1503 419 SUPERFAMILY GAF domain-like 296 418 - -
Amo16g1503 419 SUPERFAMILY GAF domain-like 173 285 - -
Amo16g1503 419 PANTHER TWO-COMPONENT HISTIDINE KINASE 8 169 - -
Amo16g1503 419 Pfam GAF domain 213 288 IPR003018 GO:0005515
Amo16g1503 419 PANTHER TWO-COMPONENT HISTIDINE KINASE 213 387 - -
Amo16g1503 419 PANTHER TWO-COMPONENT HISTIDINE KINASE 173 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1503 Amo-Chr16 27579580 27581527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1503 1 419 Histidine Kinase Gene Family AT1G09570 54.529 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1503 K12120 - gmx:100790763 565.074