Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1501 ATGACAACCTTCCATAAAACACATTCTATTGTCTTTCTGGTATTTCTTGTATCTCTACTTACAATAAATACCTCAGTCACAGCATCACCAATAACAGAAGCACAAGAACTTGTTAAATGGAAAAATACTCTATCCCTTCCTCTTCCTTCTTCACTCAAATCATGGTCACTCAACAACTTTGACAAACTTTGCAGTTGGGAAGCCATTCTTTGTGACAAAACAAACACAACAATCACACACATAAACCTCTCTGATTTCTACCTAAATGGTACTCTTGATTCCTTGGCTTTTTCTTCTCTTCCAAACCTCACTTATTTCAACCTCAACGGCAACAACTTCAATGGATCATTGCCATCTTCCATTGGAAGACTCTCCAAGCTCACTTTCTTAGACTTGGGAAACAATTTTTTTGCAGACACTTTGCCTTCAGAGCTAGGCCAGTTAAGGGAACTTCAATATCTCAGTTTTCACAACAACAATTTCATTGGCATCATTCCCTATCATCTCACAAGTCTCCCCAAGGTATGGTACCTTGACTTTGGATCAAACTACTTTGAATCTCGAAACTGGTCTCAATATTCATGCTTGCCTTCACTAACACACCTTGACTTGGATCTCAATTCATTCACCCCTGAATTTCCAAGTTTTGTGCTCAAGTGCCACAACTTAACTTTCCTTGACCTCTCCCAAAACACTTTCAATGCCACAATACCAGAATCCATGTTCACCAATTTGAGCAAGCTTGAGTACCTTAACCTTACAAACTGTGGTATGCAAGGACCACTATCATCCAATTTGTCCAAGCTCTCAAATCTCAAAGAACTTCGAATGGGAAACAACATGTTTACTGGTCCTATTCCGGAAAATATAGGATTGATATCTGGCCTTCAGTTTCTTGAATTGAATAACATTTCAGCCCATGGGGCAATCCCTGCATCCTTAGGCCAACTCAAAGAACTCCAGCATCTTGATCTTAGCACTAACTTTTTGAATTCTTCAATCCCTTTTGAACTTGGCCTATGCAGCAATCTAACTTTTCTTGCTTTAGCAGGCAATACTTTGACTGGTTCTTTACCTTTATCATTATCCAATCTGACCAAACTTTTACATTTGGGATTATCTGAAAATTCTTTTTCTGGTCAAATTTCTGCTTCATTGATCTCAAACTGGACCAAGTTGATATCTCTGCAACTCCAAAACAATAATTTAACAGGAAGAGTTCCTCCAGAAATTGGCTTGCTCACAAAAATCAATTACCTTTTCTTGTACAATAACACATTGTCAGGTCCAATACCTGTGGAGATTGGAAACCTGAAGGAAATGATACAATTAGACCTTTCAGATAACCATTTCTCTGGTAAGATTCCTCTAACTATTTGGAATCTTACAAATATTACAATCTTGAACCTTTTCTTCAATCAGTTATCAGGGACTATTCCCAAGGATATTGGAAACTTAAAATCACTACAATATTTTGATGTCAACAACAACAAATTAAGTGGAGAGTTACCAGATACCATAGCTCAACTGCCTGCTCTAGTGCATTTTTCTGTGTTTAGCAATAAATTCTCGGGTAACATTACTCAAGAATTTGGAAAGTATAGTCCTGATTTGGATACAATCTACCTTTCAAACAACAGTTTCTCAGGAGAATTGCCACCTGACTTGTGTAATGGTACTGTGTTAACTATTTTGGCAGCCAATAATAACAGTTTTTCTGGATCTTTGCCAAAGTCTTTGAGAAATTGTTCAAGACTAGTTAAACTTCGGCTTGATGTTAATCAATTCTCTGGTAACATCACAGAAGCATTTGGGGTTTATCCAAGTCTTGATTTTATCTCACTCAGTGAAAATCTTCTTGTTGGTGAGCTATCTCCAAAGTGGGGTGAATGTGTCAACCTGACCAGGATGGAAATGAGTAAAAATAAACTTTCAGGAACAATCCCCTCCGAGTTGAGTAAGCTGAATGAACTGGCATATCTGCGTTTGGACTCCAATGAATTCACAGGCAATATCCCACCTGAAATGGGAAAACTAACCAAGCTCTTTATGTTCAACATGAGCAAGAATCATATGTCTGGAGAAGTCCCTCAAAGTATTGGCAGTTTGGCTAATCTTAATTTTCTTGATTTTTCAGACAACAATTTTATTGGAAGCATTCCTAAAGAGCTTGGTAATCTTCAAAGATTAGTAAGCCTGAATTTAAGCCATAATAATCAATCAGGGGAGATGCCATCCGAACTTGGCAATCTGTTATCACTCCAGATCCTCTTGGATCTCAGCAGCAACTCTCTTACAGGAGAAATTCCTCAGAACCTTGAAAAGCTTGCAAAATTGGAGGTTCTCAATGTCTCACACAACTATTTATCTAGCAGAATCCCAGAGTCTTTGGACAACATGCTCAGCCTTGATTCCGTTGACTTTTCTTACAATAACTTGACTGGTCCAATCCCAAGTGATGGTATTTTCCAAACAGCAAATGCTAAATATGAAGGAAACCCAGGTCTGTGTGGTGAGGTAAAAGGTTTACATCCATGCATTACAAACAGAAACAAATCTGGAGGAGTTAACAAAAGGGTCCTTCTTGGTGTTCTTATACCAATTTGTGGATTACTATTGGGACTGATATGTGTTGCAATCCTTGTATGGCGACAACACCCCAAACTCAATGACGAAGAGTCCGAAAGCACTCAAACTAGTGATAAAGCTCTTAGCATTGTGTGGGGAAGGGATGGACAATTCACATTCTCTGAACTTGCCAAGGCCACTGATGAGTTCAATGATAGGCATTGCATTGGAAAGGGAGGATTTGGAAGTGTTTACAAAGCAGAATTAGGCACAGGTCAAGTTGTTGCTGTCAAAAGACTCAATATCTCGGACTCTAATGACATTTCACCAGTAAACCGGCGGAGCTTTGAGAATGAGATAAGAACACTGACAGGTGTGAGACACCGGAACATAATCAAACTATATGGTTTTTGCTCAAGGAGGAAACAGATGTTCTTGGTTTACGAATATGTTGAGAAAGGAAGCTTGCGAAAAGTGCTGTATGGAGAGGAAGGAATATTGGAGCTAAGCTGGAACAAGAGGATGAAAATTGTGCAGGGAATAGCACATGCACTTGCCTACTTACACACTGATTGCTATCCGCCAGTTGTGCACAGAGATGTAACAATGAATAACATACTATTGGACTTGGACTTTGAACCTCGTCTTGCGGATTTCGGCACTGCAAAGCTTTTAAGCTCTGACGCTTCAACTTGGACCTCAGTGGCTGGTTCTTATGGCTACATGGCTCCAGAACTAGCCCAAACAATGAGGGTCACTGACAAGTGTGATGTGTATAGTTTCGGAGTGGTGGTGTTGGAGATAATAATGGGAAAACACCCTGGAGAACTCTTGACAATTCTATCCTCAAACATGTCCTTGTCATCCATGGAAGATTCACAGGTGCTTCTGAGGGATGTGTTAGACCAGAGGCTGCCACCTCCAACAGGGCAATTAGCTGAGGCAGTGGTGTTCACAGTGACCACAGCTTTGGCATGCACACGTTTGGTTCCAGAGTCCAGACCCACAATGCGTTCTGTCGCACAAGAGCTATCAGCTACTACACAGGCTTGTCTTTTGGAGCCATTTGAGATGATAACAATGAGCAAGCTTACAGGTTTCAAAAATAATAACTAG 3684 0.3993 MTTFHKTHSIVFLVFLVSLLTINTSVTASPITEAQELVKWKNTLSLPLPSSLKSWSLNNFDKLCSWEAILCDKTNTTITHINLSDFYLNGTLDSLAFSSLPNLTYFNLNGNNFNGSLPSSIGRLSKLTFLDLGNNFFADTLPSELGQLRELQYLSFHNNNFIGIIPYHLTSLPKVWYLDFGSNYFESRNWSQYSCLPSLTHLDLDLNSFTPEFPSFVLKCHNLTFLDLSQNTFNATIPESMFTNLSKLEYLNLTNCGMQGPLSSNLSKLSNLKELRMGNNMFTGPIPENIGLISGLQFLELNNISAHGAIPASLGQLKELQHLDLSTNFLNSSIPFELGLCSNLTFLALAGNTLTGSLPLSLSNLTKLLHLGLSENSFSGQISASLISNWTKLISLQLQNNNLTGRVPPEIGLLTKINYLFLYNNTLSGPIPVEIGNLKEMIQLDLSDNHFSGKIPLTIWNLTNITILNLFFNQLSGTIPKDIGNLKSLQYFDVNNNKLSGELPDTIAQLPALVHFSVFSNKFSGNITQEFGKYSPDLDTIYLSNNSFSGELPPDLCNGTVLTILAANNNSFSGSLPKSLRNCSRLVKLRLDVNQFSGNITEAFGVYPSLDFISLSENLLVGELSPKWGECVNLTRMEMSKNKLSGTIPSELSKLNELAYLRLDSNEFTGNIPPEMGKLTKLFMFNMSKNHMSGEVPQSIGSLANLNFLDFSDNNFIGSIPKELGNLQRLVSLNLSHNNQSGEMPSELGNLLSLQILLDLSSNSLTGEIPQNLEKLAKLEVLNVSHNYLSSRIPESLDNMLSLDSVDFSYNNLTGPIPSDGIFQTANAKYEGNPGLCGEVKGLHPCITNRNKSGGVNKRVLLGVLIPICGLLLGLICVAILVWRQHPKLNDEESESTQTSDKALSIVWGRDGQFTFSELAKATDEFNDRHCIGKGGFGSVYKAELGTGQVVAVKRLNISDSNDISPVNRRSFENEIRTLTGVRHRNIIKLYGFCSRRKQMFLVYEYVEKGSLRKVLYGEEGILELSWNKRMKIVQGIAHALAYLHTDCYPPVVHRDVTMNNILLDLDFEPRLADFGTAKLLSSDASTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVVLEIIMGKHPGELLTILSSNMSLSSMEDSQVLLRDVLDQRLPPPTGQLAEAVVFTVTTALACTRLVPESRPTMRSVAQELSATTQACLLEPFEMITMSKLTGFKNNN* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1501 1227 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1052 1064 IPR008266 GO:0004672|GO:0006468
Amo16g1501 1227 SMART LRR_typ_2 221 244 IPR003591 -
Amo16g1501 1227 SMART LRR_typ_2 196 220 IPR003591 -
Amo16g1501 1227 SMART LRR_typ_2 317 341 IPR003591 -
Amo16g1501 1227 SMART LRR_typ_2 655 679 IPR003591 -
Amo16g1501 1227 SMART LRR_typ_2 269 293 IPR003591 -
Amo16g1501 1227 SMART LRR_typ_2 486 510 IPR003591 -
Amo16g1501 1227 SMART LRR_typ_2 365 389 IPR003591 -
Amo16g1501 1227 SMART LRR_typ_2 703 727 IPR003591 -
Amo16g1501 1227 SMART LRR_typ_2 100 123 IPR003591 -
Amo16g1501 1227 SMART LRR_typ_2 776 800 IPR003591 -
Amo16g1501 1227 SMART LRR_typ_2 124 148 IPR003591 -
Amo16g1501 1227 SMART LRR_typ_2 462 485 IPR003591 -
Amo16g1501 1227 SUPERFAMILY L domain-like 76 168 - -
Amo16g1501 1227 CDD STKc_IRAK 932 1200 - -
Amo16g1501 1227 Gene3D Ribonuclease Inhibitor 192 386 IPR032675 -
Amo16g1501 1227 Gene3D Ribonuclease Inhibitor 506 849 IPR032675 -
Amo16g1501 1227 Gene3D Phosphorylase Kinase; domain 1 888 1006 - -
Amo16g1501 1227 SUPERFAMILY Protein kinase-like (PK-like) 909 1200 IPR011009 -
Amo16g1501 1227 ProSiteProfiles Protein kinase domain profile. 926 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1501 1227 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 12 125 - -
Amo16g1501 1227 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 125 1220 - -
Amo16g1501 1227 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 12 125 - -
Amo16g1501 1227 Pfam Protein kinase domain 928 1197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1501 1227 Pfam Leucine Rich Repeat 778 799 IPR001611 GO:0005515
Amo16g1501 1227 SUPERFAMILY L domain-like 536 826 - -
Amo16g1501 1227 Gene3D Ribonuclease Inhibitor 387 505 IPR032675 -
Amo16g1501 1227 Gene3D Ribonuclease Inhibitor 31 191 IPR032675 -
Amo16g1501 1227 SUPERFAMILY L domain-like 437 548 - -
Amo16g1501 1227 Gene3D Transferase(Phosphotransferase) domain 1 1007 1210 - -
Amo16g1501 1227 ProSitePatterns Protein kinases ATP-binding region signature. 932 954 IPR017441 GO:0005524
Amo16g1501 1227 SUPERFAMILY RNI-like 141 452 - -
Amo16g1501 1227 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 125 1220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1501 Amo-Chr16 27556213 27560321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1501 1 671 Receptor kinase-like Gene Family AT4G08850 30.758 4.17e-77 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo16g1501 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1501 - - gmx:100809137 1643.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1501 16 27556213 27560321 Amo06g0300 06 4401879 4405677 hybridization