Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1497 ATGGCAGAAGCATGGCGTAATGGCAGCGGAAGCACAACAAAACAAAGGGAAAGTTCGCTAAAACAGGCGGAACCACAGCGAATAACGGCAAAACCGAAGCGTCGCGATGACATTAGAGTAGCGCGGAGAGAAATGGTGGCTGGACAAGTTGAAGAACGAAGACAAGGCCAGAGAGCTGAGGGAATTATGAAGTGGAAGCTGCGTTGGTGGGGAGGGAGAGGGGGAGAGTTCGTTATGGAGAGGAAGGAATTAGGGTTGGAGCACTTAATTGCCAGCTCATCACACCATGAAAAACGCACACCGCCACGTGGCAAGCACTTTACCTCCCCGCCTTTTTCACCATTCAGCTTTTTTGGGTCATCGTCGTCTTTTGACTTTAACTTGATTTACAATTGTCAAAGTGTCGATCATTTAATGGAAACGTGCACCACTCTTCTTGCTGTAGAAGCACCAGAGTATATTGATTCTAGAGATCATGCTTGGAACTTGGAATTGGAATTATGGCATGATCTTGCTTATGTCTATATATCTCTGTCATGTTGGCATGATGCAGAGATGTGTCTTTCTAGATCTAAAGCCATAAAACCATACACTGCATCAAGGTTGCATGCACTGGGTACAATGCACGAGGCAAAGGGCCTTTACAAGGAGGCTCTAAAAGCATTTCGAGATGCTTTGGATATCGATTCGGGACATGTCCCTAGCTTGATATCCGCTGCTGTGGTTCTTAGACAGTTCAATGGTCAGTCAAATGCTGCCATCAGAAGCTTTCTGATGGACGCACTACGGCATGACAGGATGAACGCTTCTGCATGGTACAATCTTGGCATTCTTCACAAGGCCGAGAATAAAATATCAGAAGCTGCAGAATGTTTTGAGGCAGCAAACTCCCTAGAAGAATCAGCACCAGTTGAACCATTCAGATGA 927 0.4595 MAEAWRNGSGSTTKQRESSLKQAEPQRITAKPKRRDDIRVARREMVAGQVEERRQGQRAEGIMKWKLRWWGGRGGEFVMERKELGLEHLIASSSHHEKRTPPRGKHFTSPPFSPFSFFGSSSSFDFNLIYNCQSVDHLMETCTTLLAVEAPEYIDSRDHAWNLELELWHDLAYVYISLSCWHDAEMCLSRSKAIKPYTASRLHALGTMHEAKGLYKEALKAFRDALDIDSGHVPSLISAAVVLRQFNGQSNAAIRSFLMDALRHDRMNASAWYNLGILHKAENKISEAAECFEAANSLEESAPVEPFR* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1497 308 SUPERFAMILY TPR-like 165 299 IPR011990 GO:0005515
Amo16g1497 308 ProSiteProfiles TPR repeat profile. 199 232 IPR019734 GO:0005515
Amo16g1497 308 MobiDBLite consensus disorder prediction 1 25 - -
Amo16g1497 308 Gene3D Tetratricopeptide repeat domain 141 304 IPR011990 GO:0005515
Amo16g1497 308 PANTHER PROTEIN NPG1 153 308 IPR043376 -
Amo16g1497 308 SMART tpr_5 199 232 IPR019734 GO:0005515
Amo16g1497 308 SMART tpr_5 165 198 IPR019734 GO:0005515
Amo16g1497 308 SMART tpr_5 269 302 IPR019734 GO:0005515
Amo16g1497 308 MobiDBLite consensus disorder prediction 1 38 - -
Amo16g1497 308 Pfam Tetratricopeptide repeat 201 230 IPR019734 GO:0005515
Amo16g1497 308 Pfam Tetratricopeptide repeat 269 300 IPR019734 GO:0005515
Amo16g1497 308 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 153 308 - -
Amo16g1497 308 ProSiteProfiles TPR repeat profile. 269 302 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1497 Amo-Chr16 27453355 27459976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1497 162 308 Calmodulin-binding Proteins AT4G28600 56.291 1.20e-48 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1497 K21843 - gmx:100784353 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1497 16 27453355 27459976 Amo12g0791 12 17046077 17053884 PCT