Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1485 ATGGATCATGTCATTGCTGGGAAGTTCAAACTTGGGAGGAAAATTGGGAGTGGTTCTTTTGGGGAGCTTTATATAGCTGTTAATGTACAAACTGGGGAGGAGGTTGCAGTCAAGCTGGAATCTGTGAAGACAAAGCATCCACAGCTTCATTATGAATCAAAATTATATATGCTTCTTCAAGGAGGGACTGGGATTCCCCACCTAAAATGGTTTGGAGTTGAAGGAGACTACAACATTATGGCTATTGACCTTCTTGGACCAAGTTTGGAAGATTTATTCAATTATTGCAACAGGAAGTTTACACTGAAGACAGTGTTAATGCTTGCTGATCAATTACTTAATAGGGTTGAATATATGCATTCAAGGGGCTTCCTTCACCGTGACATAAAGCCAGACAATTTTCTAATGGGTCTGGGACGTAAAGCAAACCAGGTATACATCATTGACTATGGCCTTGCAAAAAAATACAGGGATCTCCAGACTCATAGGCACATACCATACAGGGAGAACAAGAACCTCACAGGTACAGCTCGATATGCTAGTGTCAACACTCATCTCGGAATTGAGCAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTACTCATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAAGGTCTGAAGGCTGGCACAAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAGATATCAACTTCCATAGAGTCACTCTGCAAAAACTACCCCTCAGAGTTTGTATCGTATTTCCACTACTGCCGAGCACTGCGGTTTGAGGATAAGCCAGACTATTCGTACTTAAAGAGGCTTTTCAGAGATTTATTTATTAGAGAAGGCTATCAATTCGACTATGTTTTTGACTGGACCATATTGAAATATCCACAAATTGGTGGCAGCTCTAGAGGAGGGCGGCATGGCAATGTCACTGCCACCAATGCCAATGGCAAGGCTGCGATGAATGTGGGACCATCTGTTCAAAAGCCAGAAAAGATCTCAGCTGGGAAAGAGGTTCGCGAGAGATTCACTGGTGGTGTTGAAGGTTTCTCCCGGAGGAACCCTAGTCCTCGCGCTGAGCACACTAAACATAGGACTTATGAAGACACAGGAGTACAAAAGGAGTTGCATCATGATCAAGAGAAGGGACGCAGTTCCTCTCGATATGGCAGTACTTCAAGAAAAGCCATTATCTCATCAACCCGACCAAGTTCCTCGGGTGACCATACTGACGTTCGTACTGGCCGGCTGACCTCAGTGGCTAGCCGTCCATCTACTACACAGAGAGCTCAGCCTGTGTTTGAGAACAAACAAGCAACTTTCACACGCACCGGATCTACACGAGGTACACGTGACGATCCTCTGCGAAGCTTTGAGCTTCTCACTATCAGGAAGTAA 1398 0.4413 MDHVIAGKFKLGRKIGSGSFGELYIAVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNIMAIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKISTSIESLCKNYPSEFVSYFHYCRALRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSRGGRHGNVTATNANGKAAMNVGPSVQKPEKISAGKEVRERFTGGVEGFSRRNPSPRAEHTKHRTYEDTGVQKELHHDQEKGRSSSRYGSTSRKAIISSTRPSSSGDHTDVRTGRLTSVASRPSTTQRAQPVFENKQATFTRTGSTRGTRDDPLRSFELLTIRK* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1485 465 MobiDBLite consensus disorder prediction 304 321 - -
Amo16g1485 465 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 454 - -
Amo16g1485 465 MobiDBLite consensus disorder prediction 333 347 - -
Amo16g1485 465 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Amo16g1485 465 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Amo16g1485 465 MobiDBLite consensus disorder prediction 354 385 - -
Amo16g1485 465 Gene3D Transferase(Phosphotransferase) domain 1 1 340 - -
Amo16g1485 465 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1485 465 MobiDBLite consensus disorder prediction 302 457 - -
Amo16g1485 465 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1485 465 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1485 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Amo16g1485 465 CDD STKc_CK1_delta_epsilon 8 282 - -
Amo16g1485 465 MobiDBLite consensus disorder prediction 386 448 - -
Amo16g1485 465 PANTHER CASEIN KINASE-RELATED 1 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1485 Amo-Chr16 27245619 27251040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1485 8 213 MAP Kinase Kinase Kinase AT3G06030 25.926 2.16e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Amo16g1485 Pkinase 3.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1485 K08960 - cam:101493293 800.816