Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1478 ATGGATTCTGCAAGAAGTTGGCTTCACAAATTTCAGCCACGAGAGAAAGGGAAGAGCGCTAGCAGAAGGAAAGAAGGTGATGGAGAAGAGGATAATAATGGTGCTCCCATGGATGAAGCAGCTCTTTCAAATGTCACAAAGCAGAAGGTTGCAGCAGCYAAACATCGAACCATCTTGGAAAAGAAGTTAGCTGATGCTGATGTGTCTGAGGAGGATCAAAACAACCTACTTAAATTTCTAGAGAAAAAAGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGAGTTGATGATTTCGAGTTATTGACCATGATTGGCAAAGGTGCATTTGGAGAGGTTAGAGTATGTAGAGAAAAGACAACAGGTCATGTATATGCAATGAAAAAATTAAAGAAAGCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGAAATCTCCTTGCCGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTTCAAGATGAGGATCATCTGTATCTTATTATGGAGTACCTACCTGGTGGGGATATGATGACTCTACTTATGAGAAAGGACATCTTGACTGAAGATGAAACCCGTTTTTATATAGGAGAAACCGTTCTGGCTATTGAGTCTATACATAAACACAATTACATACATAGGGACATTAAGCCTGATAATTTATTGCTCGATAGATTCGGACATGTGAGGCTGTCAGATTTTGGACTTTGTAAACCATTAGACTGTAGTACACTTGAAGAAGCAGATCTTTCTGTAGGTCAAAATCTTCAGGGATCTGCACAAAATGATGGCACAACTCCAAAACGCACACAACAAGAACAGTTGGAACACTGGCAGCAAAACAGAAGGACTCTTGCCTATTCTACTGTTGGTACACCTGATTATATTGCTCCAGAAGTCTTATTGAAAAAGGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCCATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAACTGGAAATCTCACTTGAAATTTCCAGAAGAAGCRAGACTATCTCCAGAGGCTAAAGATCTTATTAGTAAGCTTTTGTGTAACGTCCCTCAGAGGCTAGGATCAAATGGYGCAGATGAAATAAAGGCTCATCCATTTTTTAATGGTGTTGTTTGGGACAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAAGTCAATGATGAGTTAGATACTCAAAATTTTGAAAAGTTTGAAGAGTCAGATAACCATGTTCTGAAATCAGCATCAAGATCTGGTCCATGGAGAAAGATGCTTTCATCTAAGGACATGAATTTTGTGGGATATACATACAAGAACTTTGAAATYGTCAATGACTATCAAGTTCCTGGAATGGCTGAATTGAAGAAGAAAAGTTCCAGATCAAAGAAGCCATCCATCAAGTCACTCTTCGATGTTGATCCTGAGGGATCAGAGTTGTCYGAGGCTGTAGATGCATCTGCAACCAACCAATCAGAGGAATCCCATAACAAGAATGAATGA 1572 0.3931 MDSARSWLHKFQPREKGKSASRRKEGDGEEDNNGAPMDEAALSNVTKQKVAAAKHRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKAEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEDHLYLIMEYLPGGDMMTLLMRKDILTEDETRFYIGETVLAIESIHKHNYIHRDIKPDNLLLDRFGHVRLSDFGLCKPLDCSTLEEADLSVGQNLQGSAQNDGTTPKRTQQEQLEHWQQNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAKDLISKLLCNVPQRLGSNGADEIKAHPFFNGVVWDKLYQMEAAFIPEVNDELDTQNFEKFEESDNHVLKSASRSGPWRKMLSSKDMNFVGYTYKNFEIVNDYQVPGMAELKKKSSRSKKPSIKSLFDVDPEGSELSEAVDASATNQSEESHNKNE* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1478 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Amo16g1478 523 Pfam Protein kinase domain 101 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1478 523 Gene3D Transferase(Phosphotransferase) domain 1 184 415 - -
Amo16g1478 523 SMART serkin_6 100 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1478 523 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 55 501 - -
Amo16g1478 523 Pfam Protein kinase C terminal domain 416 461 IPR017892 GO:0004674|GO:0005524|GO:0006468
Amo16g1478 523 SMART pkinase_C_6 398 463 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo16g1478 523 Gene3D Phosphorylase Kinase; domain 1 98 426 - -
Amo16g1478 523 SUPERFAMILY Protein kinase-like (PK-like) 73 440 IPR011009 -
Amo16g1478 523 MobiDBLite consensus disorder prediction 480 523 - -
Amo16g1478 523 MobiDBLite consensus disorder prediction 1 46 - -
Amo16g1478 523 MobiDBLite consensus disorder prediction 1 31 - -
Amo16g1478 523 CDD STKc_NDR_like 98 462 - -
Amo16g1478 523 ProSiteProfiles Protein kinase domain profile. 100 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1478 523 ProSiteProfiles AGC-kinase C-terminal domain profile. 398 471 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo16g1478 523 ProSitePatterns Protein kinases ATP-binding region signature. 106 129 IPR017441 GO:0005524
Amo16g1478 523 MobiDBLite consensus disorder prediction 262 281 - -
Amo16g1478 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 55 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1478 Amo-Chr16 26989652 26993782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1478 1 494 AGC Kinase Gene Family AT2G20470 74.521 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Amo16g1478 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1478 K08790 - gmx:100805940 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1478 16 26989652 26993782 Amo12g1206 12 38787691 38798610 PCT
Amo12g0777 12 16677918 16686003 Amo16g1478 16 26989652 26993782 PCT
Amo09g1122 09 28651415 28653774 Amo16g1478 16 26989652 26993782 PCT