Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1474 ATGGCTTCTTTCTTTTCAACGCTTCTTTCTTTGTTTCATCCAATATCTCCGACACTTAAGTTGTTGAAGCCAATTATCGACACCAGTGTTCATTCTGATATATCTGCTGATGAAGAGCTTAGAAAGTTATTTGAGGAACTTGGTCAGTCTGTTGATGAGTTGAGGGAGCTTTCCGAGAATTGGCATCCACTATCCAGTAAATTTTACTTTGTGATGCAAGCTGAACCGTTGATAGCTAGAGTTCAGTCTATAGGGTTCAATATTTTGCAGAAGCTGAGGGCTTCACAGCAATGTCTACCTGATGATTTGGGGTATGACATGACATCAATCATTAAGGAAGCTATAAATGAACAACTGGAAGACGAAGGACCAAGTTCTGAGATTCTAGCAAATATTGCCGAGATCCTCGACTTAAGGTCTAATCAAGATGTTTTGATTGAAGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAACATTGCAGAAGCCGAGTATATTGATCGAATGCATGAGCGAATCATCATTCTCAAGCAAGCTCAGAGCTCTATCCCGGATTCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCAGTCATTGTGTCATCCTGGCAAACCTATGAGCGAGGCAGCGAGCTTTCATCAAGGACTGGATTGATCTTGGGCTCATGGTTTGTCCAAAGACTCAGTCAGACTCTGGTTCATTCCAATCTAATACCTAACTACACTGTAAAAGCATTAATTGTTAATTGGTGCGAAACAAACAATGTGACACTAGTTGATCCAGTAAAGTCCACAAACATAAATCAACTATCTCTCCTTCATGGATCTATTGAGTCTGGTTCAATCGAGGAATCAACTGTTAGAACTTCTTTCAGTGCAAACCACCAAGTGGAAACATCACCATTGCATCCTATTTCAACTCCAGAAGATTCCTTTAGTGGCGTGGCGTGGATAATGCACAGCATGTGGATCCTACAGGTGGTTGAGGATAACCAGATCAGGATAGGGAGGGCTGGGGCTATTAAACCTCTGGTTGAGTTATTAAGTAATGGAACTCCAAGGGGCTGTGGCTGTTCTAGCAAATCTGGCCACAATACTGGTGGAAGAACTGCGATTGGGCAGCAAGGTGGCATTCCTCTTCTGGTTGAGGTTGTTGAGTTGGGTTCTACTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATTTAAACATGGTACTCCAAGAAGGAGCTGTTCCACCATTAGTAGCTTTATCACCATCAGGCACCGCAAGGGCTAAAGAGAAGTTTTCTCTTTATCTTCTTTGTTTTGTTACAAAATGTGGTGACTGA 1362 0.4244 MASFFSTLLSLFHPISPTLKLLKPIIDTSVHSDISADEELRKLFEELGQSVDELRELSENWHPLSSKFYFVMQAEPLIARVQSIGFNILQKLRASQQCLPDDLGYDMTSIIKEAINEQLEDEGPSSEILANIAEILDLRSNQDVLIEAVALERLKENAEQTENIAEAEYIDRMHERIIILKQAQSSIPDSVPADFCCPLSLELMTDPVIVSSWQTYERGSELSSRTGLILGSWFVQRLSQTLVHSNLIPNYTVKALIVNWCETNNVTLVDPVKSTNINQLSLLHGSIESGSIEESTVRTSFSANHQVETSPLHPISTPEDSFSGVAWIMHSMWILQVVEDNQIRIGRAGAIKPLVELLSNGTPRGCGCSSKSGHNTGGRTAIGQQGGIPLLVEVVELGSTRGKENAAAALLHLNMVLQEGAVPPLVALSPSGTARAKEKFSLYLLCFVTKCGD* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1474 453 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 332 365 - -
Amo16g1474 453 PANTHER U BOX DOMAIN-CONTAINING 377 441 - -
Amo16g1474 453 SUPERFAMILY RING/U-box 180 271 - -
Amo16g1474 453 SMART Ubox_2 194 260 IPR003613 GO:0004842|GO:0016567
Amo16g1474 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 269 IPR013083 -
Amo16g1474 453 Coils Coil 40 60 - -
Amo16g1474 453 Pfam U-box domain 191 264 IPR003613 GO:0004842|GO:0016567
Amo16g1474 453 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 18 296 - -
Amo16g1474 453 PANTHER U BOX DOMAIN-CONTAINING 18 296 - -
Amo16g1474 453 SUPERFAMILY ARM repeat 334 444 IPR016024 -
Amo16g1474 453 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 377 441 - -
Amo16g1474 453 Coils Coil 141 171 - -
Amo16g1474 453 Gene3D - 318 450 IPR011989 -
Amo16g1474 453 ProSiteProfiles U-box domain profile. 190 267 IPR003613 GO:0004842|GO:0016567
Amo16g1474 453 PANTHER U BOX DOMAIN-CONTAINING 332 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1474 Amo-Chr16 26937964 26940605 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1474 321 447 U-box Gene Family AT5G67340 43.478 5.77e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1474 - - adu:107458158 507.294