Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1472 ATGGCTTCTTTCTTTTCAACGCTTCTTTCTTTGCTTCATCCAATATCTCCGACACTTAAGTTGTTGAAGCCAATTATCGACACAAGTGTTCATTCTGATATATCTGCTGATGAAGAGATTAGAAAGTTATTTGAGGAACTTGGGTCAGTCTTATGTGTTGATTATCATTATTTCCTCTTTCTTGATTACTCGGTGATGCAAGCTGAACCGTTGATAGCTAGAGTTCAGTCTATAGGGTTCAATATTTTGCAGAAGCTGAAGGCTTCACAGCAATGTCTACCTGATGATTTGGGGTATGATATGACATCAATCATTAAGGAAGCTATAAATGAACAACTGGAAGGCGAAGGACCAAGTTCTGAGATTCTAGCAAATATTGCCGAGATCCTCGACTTAAGGTCTAATCAAGATGTTTTGATTGAAGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAACATTGCAGAAGCCGAGTATATTGATCGAATGCATGAGCGAATCATCATTCTCAAGCAAGCTCAGAGCTCTATCCCGGATTCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCAGTCATTGTGTCATCCTGGCAAACCTATGAGCGAGGCAGCGAGCTTTCATCAAGGACTGGATTGATCTTGGGCTCATGGTTTGTCCAAAGACTCAGTCAGACTCTGGTTCATTCCAATCTAATACCTAACTACACTGTAAAAGCATTAATTGTTAATTGGTGCGAAACAAACAATGTGACACTAGTTGATCCAGTAAAGTCCACAAACATAAATCAACTATCTCTCCTTCATGGATCTATTGAGTCTGGTTCAATCGAGGAATCAACTGTTAGAACTTCTTTCAGTGCAAACCACCAAGTGGAAACATCACCATTGCATCCTATTTCAACTCCAGAAGATTCCTTTAGTGGCGTGGCGTGGATAATGCACAGCATGTGGATCCTACAGGTGGTTGAGGATAACCAGATCAGGATAGGGAGGGCTGGGGCTATTAAACCTCTGGTTGAGTTATTAAGTAATGGAACTCCAAGGGGCTGTGGCTGTTCTAGCAAATCTGGCCACAATACTGGTGGAAGAACTGCGATTGGGCAGCAAGGTGGCATTCCTCTTCTGGTTGAGGTTGTTGAGTTGGGTTCTACTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATTTAAACATGGTACTCCAAGAAGGAGCTGTTCCACCATTAGTAGCTTTATCACCATCAGGCACCGCAAGGGCTAAAGAGAAGTTTTCTCTTTATCTTCTTTGTTTTGTTACAAAATGTGGTGACTGA 1344 0.4204 MASFFSTLLSLLHPISPTLKLLKPIIDTSVHSDISADEEIRKLFEELGSVLCVDYHYFLFLDYSVMQAEPLIARVQSIGFNILQKLKASQQCLPDDLGYDMTSIIKEAINEQLEGEGPSSEILANIAEILDLRSNQDVLIEAVALERLKENAEQTENIAEAEYIDRMHERIIILKQAQSSIPDSVPADFCCPLSLELMTDPVIVSSWQTYERGSELSSRTGLILGSWFVQRLSQTLVHSNLIPNYTVKALIVNWCETNNVTLVDPVKSTNINQLSLLHGSIESGSIEESTVRTSFSANHQVETSPLHPISTPEDSFSGVAWIMHSMWILQVVEDNQIRIGRAGAIKPLVELLSNGTPRGCGCSSKSGHNTGGRTAIGQQGGIPLLVEVVELGSTRGKENAAAALLHLNMVLQEGAVPPLVALSPSGTARAKEKFSLYLLCFVTKCGD* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1472 447 Gene3D - 312 444 IPR011989 -
Amo16g1472 447 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 371 435 - -
Amo16g1472 447 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 326 359 - -
Amo16g1472 447 Coils Coil 135 165 - -
Amo16g1472 447 SUPERFAMILY ARM repeat 328 438 IPR016024 -
Amo16g1472 447 PANTHER U BOX DOMAIN-CONTAINING 326 359 - -
Amo16g1472 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 263 IPR013083 -
Amo16g1472 447 SMART Ubox_2 188 254 IPR003613 GO:0004842|GO:0016567
Amo16g1472 447 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 19 291 - -
Amo16g1472 447 SUPERFAMILY RING/U-box 174 265 - -
Amo16g1472 447 PANTHER U BOX DOMAIN-CONTAINING 371 435 - -
Amo16g1472 447 PANTHER U BOX DOMAIN-CONTAINING 19 291 - -
Amo16g1472 447 Pfam U-box domain 185 258 IPR003613 GO:0004842|GO:0016567
Amo16g1472 447 ProSiteProfiles U-box domain profile. 184 261 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1472 Amo-Chr16 26929457 26932097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1472 315 441 U-box Gene Family AT5G67340 43.478 6.90e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1472 - - adu:107458158 464.151