Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1464 ATGTGGTATGCAGAGGTGGCAAAGCTAAACGCAAATGAATGGTACTTCTTCAGCTTCAGAGACCGGAAATATGCGACGGGGTTCAGAACGAACAGAGCGACGACAAGTGGTTATTGGAAAGCAACGGGGAAGGATCGAACGGTGCAGGATCCACTGACACAAGAGGTTGTAGGGATGCGGAAGACTCTGGTGTTCTACCGGAACAGAGCTCCCAATGGCATCAAAACTGGCTGGATCATGCATGAGTTTCGGTTGGAGACCCCACACATGCCCCCTAAGGAAGATTGGGTGTTGTGTAGAGTGTTCCACAAAAGCAAAGAAGAAAACAGTGCCAAACTTATCATGTATGATTCCATTTCCACACATCATCAATCATCAAACCCTATGGCATTGGTATCAACCCATCATTTGAACCCCATCAACAACCATAATAACACTTATCATGCCATGAATAATTTCCTTCATCACTTCTCATCATCAAGGGATGATAGTCAAACAAATAACGCCAATAATAATAATAGCAGTGTTACTCAAATTAGTCCCAAGGGTTATGATGGATATGGCTTCATATGGGATCACATGGATCTTGAAGATGGTGGTGTGCCCTCATCAGACTTCCAGGTCGACAATAATAATAATCGTAACAACAACAATAATAATAATATTGCATTGCTATAA 678 0.4248 MWYAEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVQDPLTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENSAKLIMYDSISTHHQSSNPMALVSTHHLNPINNHNNTYHAMNNFLHHFSSSRDDSQTNNANNNNSSVTQISPKGYDGYGFIWDHMDLEDGGVPSSDFQVDNNNNRNNNNNNNIALL* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1464 225 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 214 - -
Amo16g1464 225 MobiDBLite consensus disorder prediction 157 180 - -
Amo16g1464 225 ProSiteProfiles NAC domain profile. 1 104 IPR003441 GO:0003677|GO:0006355
Amo16g1464 225 MobiDBLite consensus disorder prediction 201 225 - -
Amo16g1464 225 MobiDBLite consensus disorder prediction 204 225 - -
Amo16g1464 225 SUPERFAMILY NAC domain 6 104 IPR036093 GO:0003677|GO:0006355
Amo16g1464 225 Gene3D NAC domain 3 110 IPR036093 GO:0003677|GO:0006355
Amo16g1464 225 Pfam No apical meristem (NAM) protein 7 85 IPR003441 GO:0003677|GO:0006355
Amo16g1464 225 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1464 Amo-Chr16 26594558 26596390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1464 5 107 NAC Transcription Factor Family AT1G56010 62.727 6.55e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo16g1464 NAM 7.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1464 - - ahf:112754075 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1464 16 26594558 26596390 Amo06g0277 06 3760339 3764186 hybridization
Amo16g1464 16 26594558 26596390 Amo12g0739 12 15587849 15594524 PCT
Amo12g0739 12 15587849 15594524 Amo16g1464 16 26594558 26596390 PCT