Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1460 ATGAAATCGGATTATGGAAGTAATACTGCCAAATTAAAGGAGATGGGAGAGCTTTCAGCTCCCCCTGGTTTTGCATCGCTTACATCTTTCATTTTGAAAAAGGGTAAAAAGGTTACAGAAAATGACAAACTTGCAACCTGTCTGAATGAAACTAAGCACGTGCCAGTTGATGCAGACGGTAAAAACGACGTGAATGATATTGGTACATATTACCAGATTTTTAAGAATCGACCCTGGATACTCTCTGACCAGAGCAAGAGCAACGACAAACCTGAGGAGTCTCACACTGAATTTATTCCTATGGATCACTCGTCAAATGCTAGTCGTCCAGAAGGGATCACTCGTGGATGTCCAAACTGCAATAATTGTTTGAAGGTAACAGCAAGGTGGCATCCTGAGGATGCAACGAGAGAAGCCCTTGAAGAAGCTCCTCTTTTCAACCCAACAGAAGAGGAATTCAATGACACCCTCAAATATATTGCAAGCATACGATCTAGCGCAGAGCCTTATGGAATTTGTCGTATTGTACCTCCTACTCGCTGGAAACCACCATGTTCTCTTGAGGAAAAGAACTTATGGGAAGGCTCTGAATTTGTTGCTCAAATTCAACGAATAGATGGAATCCAAGTTAAGCATGCAGAAGAAAATGTTGCTAGTTCTTGTGAAAATACAAAGGCCAAGAGAAGAAGGGTGACACCAGTAGATTTGGACTCTCATCTTGCGAATGCAAGCACTTGCACCGTAAATAGTCAGGGTGTTGAAGATTGTGTCTCTGAACCCTGTCCTAAATTCAGTCTCAAGACGTTTAAGAATTTTGCTGATGAATTCAAAATCCAGTACTTTGATTACAAGGGCAAGAATAAGAATGTGGGTTCTGATTTAAATTTAGATACAAATCAACATAAGTGGGAGCCATCTGTGGAGAATATTGAGGGTGAATATGGAAGGATTGTTCAAAATCCAACTGAAAAAATTGAGGTGCTTCATGGTAACACTTTGGAGGCTGAAGGTTTTAGCAGTGGATTTCCTACAGCTGCTGATTCTGGGGAGGAACACATTTCCCCTGAATATTTGAAATCTGGATGGAACTTAAACAACATAAATTCATTGCCTGGTTCTCTTCTTTCTTTTGAAAGCTCTGGTGCTTCACATAATTTTGGTCATCGAATTCATGTTGGAATGTGCTTCACTCTGCAAAAATGGAAAGTTGAAGAGCACCACTTATACTTATTATCATACCTGCATTTGGGTGAGCCTAAAGTGTGGTATAGCATCCCACGAAGATATGCTGCCAACTATGAAACAATTAGGAAGAAGTATTTATCAGGTCTGCATGCAAGACAGCCTGATATTGATGATAATCTGATGATGCAGTTATCCTGCTTCATATTGAAGGCAGAGGGAATACCTGTATATCGCTGTGTTCAATATCCTCGTGAGTTTGTTCTTGTCTTCCCAGGAGCATATCATTCTGGATTTGATTGTGGTTTCAATTGTTCTGAATCAGTAAACTTTGCTCCTCTCGAGTGGCTTCTTCATGGACTGAATGTGGTAGAGCTATATTGTGAGAAGAGGAAAAAGACATTAATTTCGTATGATAAACTTTTGCTGGGAGGAGCAAAGGAAGCTGTAAGGGCACGATGGGAAATCGATCTGTGTATGAACGACATGACAGATAAATTAACATGTAAAGATGCGTATCAAAGAAACGGGATCTTAGCAAAAGCTCTGGATGCTCGCATTAAGAGCGAAAGTATCAAGAGAGAATACCTATGCAGTTCTTTGAAATCACAAAGAATGGATGAAAGTTTTGACACTTGTGTCAAAAGGGAATGCGGCATATGTCTGTGTGATTTACACTTGTCTGCTGTACATTGTTTGTGTTCAGAAGACAAGTTTGCGTGCCTGGATCACGCGAAACAGCTTTGTCCATGCAGTTGGAGCAACAAAATCCTCCTCTACCGTTATGAAATTAGCGAGTTGAATGTTCTTTGTCAAGCTTTGGAAGGAAAGTTAAGTGCAGTCTATAAATGGGCCAAAGAGTATCTTGGATTAAGATTTCAGTCTGTTGCCTCCAATAGATCAAAACAAATGAAACAAAACGGAGCGGCATCAGGAATCGTGGGGAATCCTCGCGGCAATTGTATTAGTTCTTTCAGCATTACCCCAAAAGAGAAGACGAAAGCAAAAGAGAAAACGTTGGGGGGCCGACCTCCTAGATCATGTGCTAATGGAGGAACCAATTCCACCAGTATCAAAACTGATATGAAGGCACCTGTGGGTAAGCCAACAACTTCAAAGAAGGTACAGCGCGATCAGAAAGTATCTACAGTTTCTTCAGTCACCAACTCACGATACTTGTCTTTTCTACAGCAAAATACATTAGTCGAAGTGCCATCTGATAGTTGCTCTTCCTCGTCCTCAGAATCTGACAATGCGTAA 2442 0.4087 MKSDYGSNTAKLKEMGELSAPPGFASLTSFILKKGKKVTENDKLATCLNETKHVPVDADGKNDVNDIGTYYQIFKNRPWILSDQSKSNDKPEESHTEFIPMDHSSNASRPEGITRGCPNCNNCLKVTARWHPEDATREALEEAPLFNPTEEEFNDTLKYIASIRSSAEPYGICRIVPPTRWKPPCSLEEKNLWEGSEFVAQIQRIDGIQVKHAEENVASSCENTKAKRRRVTPVDLDSHLANASTCTVNSQGVEDCVSEPCPKFSLKTFKNFADEFKIQYFDYKGKNKNVGSDLNLDTNQHKWEPSVENIEGEYGRIVQNPTEKIEVLHGNTLEAEGFSSGFPTAADSGEEHISPEYLKSGWNLNNINSLPGSLLSFESSGASHNFGHRIHVGMCFTLQKWKVEEHHLYLLSYLHLGEPKVWYSIPRRYAANYETIRKKYLSGLHARQPDIDDNLMMQLSCFILKAEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSESVNFAPLEWLLHGLNVVELYCEKRKKTLISYDKLLLGGAKEAVRARWEIDLCMNDMTDKLTCKDAYQRNGILAKALDARIKSESIKREYLCSSLKSQRMDESFDTCVKRECGICLCDLHLSAVHCLCSEDKFACLDHAKQLCPCSWSNKILLYRYEISELNVLCQALEGKLSAVYKWAKEYLGLRFQSVASNRSKQMKQNGAASGIVGNPRGNCISSFSITPKEKTKAKEKTLGGRPPRSCANGGTNSTSIKTDMKAPVGKPTTSKKVQRDQKVSTVSSVTNSRYLSFLQQNTLVEVPSDSCSSSSSESDNA* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1460 813 ProSiteProfiles JmjC domain profile. 359 522 IPR003347 -
Amo16g1460 813 Gene3D Cupin 128 506 - -
Amo16g1460 813 MobiDBLite consensus disorder prediction 82 109 - -
Amo16g1460 813 PANTHER LYSINE-SPECIFIC DEMETHYLASE 91 765 - -
Amo16g1460 813 MobiDBLite consensus disorder prediction 724 777 - -
Amo16g1460 813 SUPERFAMILY Clavaminate synthase-like 260 548 - -
Amo16g1460 813 Pfam C5HC2 zinc finger 612 662 IPR004198 -
Amo16g1460 813 ProSiteProfiles JmjN domain profile. 143 184 IPR003349 -
Amo16g1460 813 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 91 765 - -
Amo16g1460 813 Pfam jmjN domain 144 177 IPR003349 -
Amo16g1460 813 Pfam JmjC domain, hydroxylase 391 505 IPR003347 -
Amo16g1460 813 SMART cupin_9 356 522 IPR003347 -
Amo16g1460 813 SMART JmjN_1 142 183 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1460 Amo-Chr16 26496172 26502205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1460 19 733 JUMONJI Transcription Factor Family AT1G08620 43.502 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo16g1460 JmjC 1.1e-31 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1460 - - adu:107491746 1548.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1460 16 26496172 26502205 Amo06g0274 06 3701337 3707297 hybridization