Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1422 ATGATCTACGGTGATGGAAGTGACAAGACCATCATATCCGGCAGCCGCAACTTCATCGACGGCACTCCCACTTTTGAGACTGCCACTTTCGCTGTGAAGGGAAAGGGTTTCATTGCAAAGGACATACGGTTCAAGAACACGGCAGGCGCAGACAAGCATCAGGCGGTGGCACTGCGATCAGGGGCGGACCAATCAGTGTTCTACAGGTGCTCGTTCGAGGGTTTCCAGGACACACTGTACGCCCATTCCAACAGGCAGTTCTACCGCGACTGCGACATCACCGGCACCATCGACTTCATCTTTGGCAATGCCGCAGTGGTCTTCCAGAACTGCAAGATCATGCCACGTCAGCCTCTCCCCAACCAGTTCAACACCATAACCGCGCAGGGAAAGAAAGACCCCAACCAGAACACCGGCATCGTCATCCAGAAATGCTCCTTCTCTGCCTTCGCCAGTGATCTTCAGGCCCCTACCTACCTTGGCCGCCCTTGGAAGGATTTTTCCACCACCGTCATCATGCAGTCCGATATCGCCTCCTTCTTGAAGCCCGTGGGCTGGATAAGCTGGGTTGCCAATGTCGATCCACCAAAAACTATATTTTACGGTGAGTACCGCAACACTGGGCCTGGATCCGATGTCTCGCAACGGGTTAAGTGGGCTGGCTATAACCCCTCTCTAACTGAAACCGATGCTGTCAAATTCACAGTGCAGTCCTTTATTCAAGGCCCAGATTGGTTGCCAGATTCTGCTGTAAACTTTGACTCCACTCTCTGA 774 0.531 MIYGDGSDKTIISGSRNFIDGTPTFETATFAVKGKGFIAKDIRFKNTAGADKHQAVALRSGADQSVFYRCSFEGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCKIMPRQPLPNQFNTITAQGKKDPNQNTGIVIQKCSFSAFASDLQAPTYLGRPWKDFSTTVIMQSDIASFLKPVGWISWVANVDPPKTIFYGEYRNTGPGSDVSQRVKWAGYNPSLTETDAVKFTVQSFIQGPDWLPDSAVNFDSTL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1422 257 Pfam Pectinesterase 1 242 IPR000070 GO:0030599|GO:0042545
Amo16g1422 257 PANTHER PECTINESTERASE 1 254 - -
Amo16g1422 257 ProSitePatterns Pectinesterase signature 2. 93 102 IPR033131 -
Amo16g1422 257 Gene3D - 1 257 IPR012334 -
Amo16g1422 257 SUPERFAMILY Pectin lyase-like 1 254 IPR011050 -
Amo16g1422 257 PANTHER PECTINESTERASE 1-RELATED 1 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1422 Amo-Chr16 25062650 25066239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1422 1 251 Carbohydrate Esterase AT1G53840 71.315 6.59e-138 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1422 - - gmx:100777128 454.521