Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1404 ATGGTGAATGTAACAATGGCATCAAGTAGCAAGTTTTGCAAGGATGCGTGTATGTGGAATGAGCCTCTTGCGGACAACTGGATGGAGGGCAAGYCTGGTGTGTCGAATCCACAGGACACAATGTATGATACGAGAGTGGAGGAAGATGCTGAGTTATCCGATTGGGAGGGAAGGGGGGCTTCAASMMTMWCCCTTTTTTTGGGTTTGGATGYGTTGCAAGCAGAAGATGTTCTTGAAATGGAGTTTTCTTCACCTCAGGAGGCAAGRGGCTTCTATAACAATTACAGCCGACTAAAGGGRTTTGCATCAAGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATAGTGCGYTACACGTTCGTTTGTAATAGGCAGGGATTTCGAGAGAAGAAATGGTTGGAYAAGGTTGATCGCAAAAGGGAGCATAAGGTTGTAACCCGATGCGGATGCARGGCGGAGKTGAGGATAAAGKGGAAAGAGGGTAGTGGGAGGTGGTATGTGTCGCGTTTTGTCGAGGAYCATAACCACGAACTTGCGTATGGGAAGCTTGTTGATTATCTGCGGTCACACAGGAAGATATCTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGGGAGATTGGGATTAGCATACCTAAGATTTATGAGTCATTCGCAGCACAACTAGGGGGCTTTAATCTGGTAACATTCACAAAACAAGATATGTGTGTGAACTTTCTTCGTGACACCGAGGACGAGCTAGACTTTCGTTCATGGTACGGAACACCTGTGCTACAAACAGAGTTTGTTGAGCTGGAAAAGTCTGGATGGAGTATGTTCACCCGCGAAATGTTTCTCAGATTCCGGGATAGCCTGAAACGATGTAACCCTCATGCATATACTCTCCAGAAGTATCGGAGGCCTGAGATGAATTGGAAGGTATATAGGGACCATATCTCGAACACATTTAGTTGCACCTGCATGCGTATGGAGTCGTTTGGCSTTCCTTGTGTGCATATCCTTTCCGTGTGTGTAAGTCTAGACTTGGTGGAAATCCCTGAAAGCCTTGTCCTCCGTAGATGGTCTAAGGCAGCCAAATTGGAGATCCATAACCAATGTGTTGAGCAACATACTGCTGACCCAAGTGTGACCTATAGGACACGATTGGGTGCTTTCTCCCAGCTGTYTAAGCGRTTAGGGCGCGTTGCTTGCATGAGTWATGAAGACTTCAAARTTTACTCAAAGAAGCTTRTGAGCGATGCTWTGTTCCTTGAAATAAAGTACGGWTTAAGACCATCAACGGATGATATCACAACAGCAAATGATTGCGGGGTGAAGGACCCTATTCGTGTCAGAACAAAAGGCACGGGTCGGATGAGCCAAGCAGGCGGTTCTGCGTCGAAAACYAAAAGAAAGTGCAGCACATGCGGGAAGCTAGGGCACCGGAGGACTAGATYCCCCAACGGAGCCYCGCAAGCGCCAACGAGGAACAATGAATCACATGGTGGAAGAAATAAACGCAAGCGATCSAAGGTACCCGTCGTTGTCCCAGATAATTGTCACGCTGAAAATGCATGTCAAGCTGGAAGCGACAAACGGGATCACTTTTCGCTTGCAGACCCATGA 1608 0.4664 MVNVTMASSSKFCKDACMWNEPLADNWMEGKXGVSNPQDTMYDTRVEEDAELSDWEGRGASXXXLFLGLDXLQAEDVLEMEFSSPQEARGFYNNYSRLKGFASRRGKTVRNTAGEIVRYTFVCNRQGFREKKWLDKVDRKREHKVVTRCGCXAEXRIKXKEGSGRWYVSRFVEDHNHELAYGKLVDYLRSHRKISEVEVAQLTSMREIGISIPKIYESFAAQLGGFNLVTFTKQDMCVNFLRDTEDELDFRSWYGTPVLQTEFVELEKSGWSMFTREMFLRFRDSLKRCNPHAYTLQKYRRPEMNWKVYRDHISNTFSCTCMRMESFGXPCVHILSVCVSLDLVEIPESLVLRRWSKAAKLEIHNQCVEQHTADPSVTYRTRLGAFSQLXKRLGRVACMSXEDFKXYSKKLXSDAXFLEIKYGLRPSTDDITTANDCGVKDPIRVRTKGTGRMSQAGGSASKTKRKCSTCGKLGHRRTRXPNGAXQAPTRNNESHGGRNKRKRSKVPVVVPDNCHAENACQAGSDKRDHFSLADP* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1404 535 Pfam FAR1 DNA-binding domain 91 180 IPR004330 -
Amo16g1404 535 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 73 214 - -
Amo16g1404 535 MobiDBLite consensus disorder prediction 442 510 - -
Amo16g1404 535 ProSiteProfiles Zinc finger SWIM-type profile. 309 342 IPR007527 GO:0008270
Amo16g1404 535 MobiDBLite consensus disorder prediction 452 466 - -
Amo16g1404 535 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 73 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1404 Amo-Chr16 24766145 24770034 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g1404 FAR1 7.8e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1404 - - aip:107611673 543.502