Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1396 ATGCAGATCAATAAGGAAGAACGCGAGCAGAGAAGGAGGTTGCAACAGAAGGTTTATGTTGAGCAAAGCTCATTCTGCTCTGCTGGTCGCATAGACACATTATCTGATCAACCGATCAAGCCAGAAAGAATGGGGAATGAGCACGACGACGATTTCAAGGACGAGAAGAACACCCGCCCTCTCGACGAGGATGACATCGCACTCCTCAAAACCTATGCATGTATCTATCTTTCTATTCTTCAAACCCTACTTCCCACCGAATTATACTTCATATTTTTCACCACTTTCATTTGGGATTTCTTGCTTTGCTGCCTCTGCTTCCACCTTTCCGCTTCTTTGCTTCTCCATAAGGAAATCAAAGATATGGCAAAGAAAGTCAATGACTTATGCGGTATCAAAGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTGTGCACGAAGATTATAAATCCAAATTCTGAAGATGCCAAATATGTTATCAATGTGAAGCAGATAGCAAAGTTCGTTGTTGGGCTTGGTGACAAGGTTTCCCCCACTGACATAGAAGAAGGGATGCGCGTAGGGGTTGATAGAAACAAATATCAGATTCAGATTCCCTTGCCTCCAAAAATTGATCCAAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTAACATATAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAAAATTTGTTAAACTTGGAATTGATCCTCCAAAAGGTGTACTTTGCTATGGTCCACCAGGGACAGGCAAAACACTTCTTGCTAGGGCTGTGGCTAACAGGACTGATGCTTGTTTTATAAGGGTCATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTAGAATGGTCCGTGAATTATTTCAGATGGCACGTTCAAAGAAGGCATGCATTGTCTTTTTTGATGAAGTTGATGCCATTGGAGGTGCGCGGTTTGATGATGGTGTAGGTGGTGATAATGAGGTTCAGCGCACAATGCTTGAAATTGTGAATCAGCTTGATGGATTTGATGCCCGTGGAAATATCAAAGTGTTGATGGCAACTAACAGGCCTGAACTCTCGATCCAGCACTACTGCGGCCTGGGCGATTGGATCGCAAAGTTGAGTTTGGGCTTCCTGATTTAG 1164 0.4356 MQINKEEREQRRRLQQKVYVEQSSFCSAGRIDTLSDQPIKPERMGNEHDDDFKDEKNTRPLDEDDIALLKTYACIYLSILQTLLPTELYFIFFTTFIWDFLLCCLCFHLSASLLLHKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPELSIQHYCGLGDWIAKLSLGFLI* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1396 387 CDD AAA 228 368 - -
Amo16g1396 387 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 115 365 - -
Amo16g1396 387 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 49 78 - -
Amo16g1396 387 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 115 365 - -
Amo16g1396 387 Gene3D - 111 214 IPR012340 -
Amo16g1396 387 SMART AAA_5 248 383 IPR003593 -
Amo16g1396 387 Pfam ATPase family associated with various cellular activities (AAA) 252 366 IPR003959 GO:0005524|GO:0016887
Amo16g1396 387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 366 IPR027417 -
Amo16g1396 387 Gene3D - 215 370 IPR027417 -
Amo16g1396 387 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 49 78 - -
Amo16g1396 387 MobiDBLite consensus disorder prediction 31 58 - -
Amo16g1396 387 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1396 Amo-Chr16 24542931 24547051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1396 206 365 Calmodulin-binding Proteins AT3G56690 40.116 1.20e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1396 K03061 - gmx:100808239 516.538