Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1389 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGGCGGCGGCGGTGACAGCTAGGTCTCGCCGGCTCACCGCGGAGTACCTGTGGCCTGACCTGAAGAAAGGCAGCTCAGGGAAGCGCGTGCCGAAGGCAGCGGTGATCGACCTCGACGATGATTTCGAGGCCGATTTCAGGGAATTCAAGGACGACTCCGACATCGACATTGACGACGATGAGGATGATGCCAAGCCCTTTGCTTTCGCCGCCGCCAAAGCTCCCAAGTCCATATCCCGTGGTGCTGGAAAATCTGTGGCGGTCAAAGCACAATCTGAGAAGTCTGCAAAGAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAGCGTCCTTGGGGGAAATGGGCAGCTGAGATCCGTGATCCAAGAAAGGGTGTTCGTGTCTGGCTAGGAACCTTCAGCACTGCTGAAGAGGCTGCCAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAAGAGGCACCACGCACTCCTCCGAAACGTGCCAGGCCAAATCTGAATGCTGTTCAGCCCAATCTGAGTCATAAATTCAGTGTTGGTAACAATATGGAGAACTATGGTCCTCTGGATGGGTTTGAACAGAAACCACTGGTTAACCAGACTGCTAACATGGACTCCATTCCTGAGGGTGGAAATGGTTTCACATCCCTTACCTCACCTGATGATGTGACCCTTTACTTCAGCTCGGATCAGGGGAGTAATACATTTGATTATTCAGATCTTCGCTGGGGTGAACAGGCCCCAAAGACTCCCGAGATCTCATCCATGCTTTCTGCTGCTCTGGAAGGGGAATCTCCTTTTGAGCAAGATGCTAACCAACAGAAAAATCTGCAGTCTATCTCACAGGATGTGGTACCTGTGAAAGATGATTCTTCAAAGACACTGTCTGAGGAGCTTGTGGATATTGAATCCGATTTGAAATTCTTTCAGATGCCTTTTCTTGAAGGGAGCTGGGATGATACTTCATTGGAATCTTTGCTAGCTGGAGACACCACTCAGAATGGTGAAAACCTGATGAACCTGTGGAGCTTTGATGACATTCCTTCCATGTCTGGTGGTGTGTTCTGA 1131 0.5022 MCGGAIISDFIPAAAAVTARSRRLTAEYLWPDLKKGSSGKRVPKAAVIDLDDDFEADFREFKDDSDIDIDDDEDDAKPFAFAAAKAPKSISRGAGKSVAVKAQSEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPEEAPRTPPKRARPNLNAVQPNLSHKFSVGNNMENYGPLDGFEQKPLVNQTANMDSIPEGGNGFTSLTSPDDVTLYFSSDQGSNTFDYSDLRWGEQAPKTPEISSMLSAALEGESPFEQDANQQKNLQSISQDVVPVKDDSSKTLSEELVDIESDLKFFQMPFLEGSWDDTSLESLLAGDTTQNGENLMNLWSFDDIPSMSGGVF* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1389 376 Pfam AP2 domain 115 164 IPR001471 GO:0003700|GO:0006355
Amo16g1389 376 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Amo16g1389 376 PANTHER DNA-BINDING DOMAIN 1 370 IPR044808 GO:0003700|GO:0009873
Amo16g1389 376 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
Amo16g1389 376 MobiDBLite consensus disorder prediction 95 119 - -
Amo16g1389 376 CDD AP2 115 173 IPR001471 GO:0003700|GO:0006355
Amo16g1389 376 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Amo16g1389 376 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Amo16g1389 376 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
Amo16g1389 376 PANTHER EREBP TRANSCRIPTION FACTOR 1 370 - -
Amo16g1389 376 SUPERFAMILY DNA-binding domain 115 173 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1389 Amo-Chr16 24368434 24371281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1389 1 376 AP2-EREBP Transcription Factor Family AT1G53910 45.742 6.82e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo16g1389 AP2 4.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1389 K09286 - gmx:100170723 434.491