Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1379 ACCCATCCTATATCCAAGAGGGTGATTTGGTTATTTGGCAGCCTTATCTATCTCCTTACTAAAACGAAAACTGCAAAAAACAAAGCAAAGCATGAAAACATGAAGTCCCTCACAGTCACCGCCAGTGTTTTGAACCCCACAAATCAACCACCAGTCAACAAACTCCACTTCTTCCACTCTCACTCTCTCTCATTCTCACTCTTCTTCCCACACACATCATCAAACCTAAAATGCCACCATCAAAAGCCAATCATCACAGCATGCTCTTCTTCTTCTTCAATCGAAATCGACATGGTGAAGAACAACCAAGGAATCTACACCCCTAAGCACCCCAAAGTAGTCGTCCTCTGGGACCTCGACAATAAGCCCCCACGAGGACCCCCATACGACGCCGCACGCTCCCTCACACGCCTCGCAACTCACTTTGGCCACATCGTCGACATCTCTGCCTACGCCAATCGCCACACATTCATCCACCTACCGCAGTGGGTCCTACAGGATCGCCGCCAGAGAAAGCACCTCGACGTGCTGGAACGGAAGGGCCTGGTGGTGCCATCGGAGCCCTACAGGTGTTCCGTCTGCGGGAAAAAGTGTCGCACCAATCTGGATCTGAAGAAGCATTTCAGGCAGTTGCATGAACGAGAGAGGCAGAAGAAGCTTAATCGGATGAGGTCCTTGAAAGGGAAGAAACGGCAGCGTTTTAAAGAGAGGTTTATTCAGGGGAATGAAAAGTATAATGAGGCTGCTAGGTCTCTCATTAGGCCCAAGGTTGGTTATGGGCTAGCTTCAGAGCTGAGGAGGGCTGGGGTATATGTGAAGACTGTGGAGGATAAGCCTCAGGCTGCGGATTGGGCATTGAAGAGGCAGATGCAGCACTCAATGACCAGGGGGATTGATTGGCTGGTTTTGGTTTCAGATGATTCGGATTTCGCAGAGATGATGAGGAGAGCAAGAGAGAGGGAATTGGGGACAGTGGTGGTTGGGGATTGGGATAGGGCACTGGGGAGGCAAGCCGATTTGTGGTTTCCTTGGATTGATGTTGAGAATGGGAATGTTTCGGAGAAGGATCTGGTGATCGAGAAGAACAGGAGTAGGGCTCAAAGGGACGGTTTTGTCGTGGAAGAAGATGATGATGGGTTTTTTTCATTGTCGAGATTTGACTGTGGTGGTGGTCATGGGAGTAGTGATTTGGATGAGCTTGTAGATGAACTTGCAGCAGTGAGGACTGATTTTACTGCGGCAATTTCAGATGAGGATGAAGACGATTATATGTTGGGGAGTAGTGAGGATGAGTACATAGAAGATTATGATGAAGATAGTGATCAAGAAGATGATGGGTTCTATTGA 1347 0.4855 THPISKRVIWLFGSLIYLLTKTKTAKNKAKHENMKSLTVTASVLNPTNQPPVNKLHFFHSHSLSFSLFFPHTSSNLKCHHQKPIITACSSSSSIEIDMVKNNQGIYTPKHPKVVVLWDLDNKPPRGPPYDAARSLTRLATHFGHIVDISAYANRHTFIHLPQWVLQDRRQRKHLDVLERKGLVVPSEPYRCSVCGKKCRTNLDLKKHFRQLHERERQKKLNRMRSLKGKKRQRFKERFIQGNEKYNEAARSLIRPKVGYGLASELRRAGVYVKTVEDKPQAADWALKRQMQHSMTRGIDWLVLVSDDSDFAEMMRRARERELGTVVVGDWDRALGRQADLWFPWIDVENGNVSEKDLVIEKNRSRAQRDGFVVEEDDDGFFSLSRFDCGGGHGSSDLDELVDELAAVRTDFTAAISDEDEDDYMLGSSEDEYIEDYDEDSDQEDDGFY* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1379 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 217 IPR013087 -
Amo16g1379 448 CDD PIN_LabA-like 199 329 - -
Amo16g1379 448 PANTHER - 53 406 - -
Amo16g1379 448 SUPERFAMILY beta-beta-alpha zinc fingers 186 217 IPR036236 -
Amo16g1379 448 Coils Coil 209 229 - -
Amo16g1379 448 Gene3D - 107 346 - -
Amo16g1379 448 ProSitePatterns Zinc finger C2H2 type domain signature. 191 212 IPR013087 -
Amo16g1379 448 PANTHER OS06G0166200 PROTEIN 53 406 - -
Amo16g1379 448 MobiDBLite consensus disorder prediction 418 448 - -
Amo16g1379 448 SMART c2h2final6 189 212 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1379 Amo-Chr16 24172207 24174208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1379 53 384 C2H2 Transcription Factor Family AT5G52010 65.868 4.40e-157 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo16g1379 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1379 - - adu:107495834 743.806