Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1373 ATGGAAGAAGAAGTGAAAGGATATTCCGATAGCAGAGAAGAGGAGGAGGAGGAGGAGGAAGACGAAGCAGCGGAAATCATCCCAATTCCAAACACAAGACAAGAAACCAACAGCAGCGGAAACAGGTTACAGCAGCAGCAAGATACAGCAGTAGCTCCCAATTTCAGTCAGCGGAAGCAGCTAGATTTGATGGAGTTGTCACTAGGGAGCGGGAGCAGCAAGGACGATCGGAATTGGCAGCAAGGAGGAGGAGGAGGAGGAGGAATGGTTGGTTCTTGCTCATCATCATCATCGGAGGCGGTGGAGAAAGAGCACATGTTCGACAAAGTGGTGACCCCAAGCGACGTAGGGAAGCTGAACAGGCTAGTGATACCGAAGCAGCACGCGGAGAAGTACTTTCCATTGGACTCATCCTCCAACGATAAGGGGCTTCTCCTCAACTTCGAGGACAGGAACGGCAAGCTGTGGCGCTTCAGATACTCCTACTGGAACAGCAGCCAGAGCTATGTTATGACCAAAGGCTGGAGCCGCTTCGTTAAGGAGAAGAAGCTCGACGCCGGCGACATTGTCTCCTTCCACCGCGGCCTCGGGGAACTCTATAGACACAGGCTGTACATTGACTGGAGGCGCAGGCCCGACCATCCCCCTCCTGACCCTTCCGCCTCCCTCATCTCCCCTTTCTTCCTTCCTAACCACTACTCCGCCGCCATCACATGGGGCGCCGGCGGCAGGTTCTACTCTCTGCCTTCTCCCACGCCTCCTCCTCGCCACCATCACTTTCATCATCATCAGCACCACCCCCTCGCTACTAATTACAACACCCATATGTATGGCTTTCATCATCATCCAGGTGCTGCAACTGGAACAAGTCATCATCTTCTCAGCGGTTACAATGATCAGCAGCTGAATTCCGGATCTCCTGGACCTCTCTATTACCTGAGGTCACCCCCCTCAATGTCAATTGTTGACCCCAACTTGCATCAGGAGAGAGGGACTGCTATTGCCCCCATGATCATTGATTCTGTGCCGGTTGCTCATCATCATCATCAACAACAGCAACATCAACATGGTGTGGTGCCTAATAGTAGTAACTTTGACAGTACTAATACCGCAGGAAAACGGCTGAGGCTATTTGGGGTCAACATGGAATGTGCTTCTTCTTCTTCTTCTTCTCCAGCTGAAGATCACTCGCATKTGGCAATGTCTAGTTCATTACCATCGTCAAGCAGGTTTGGGGATCAGAGAGGGGATACTACTACTACTACTMCTTCTGTACTTTTTGATTTGGATCCCTCTTTGCAATACCATCACCACCACCGGCATTGA 1326 0.5128 MEEEVKGYSDSREEEEEEEEDEAAEIIPIPNTRQETNSSGNRLQQQQDTAVAPNFSQRKQLDLMELSLGSGSSKDDRNWQQGGGGGGGMVGSCSSSSSEAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGLGELYRHRLYIDWRRRPDHPPPDPSASLISPFFLPNHYSAAITWGAGGRFYSLPSPTPPPRHHHFHHHQHHPLATNYNTHMYGFHHHPGAATGTSHHLLSGYNDQQLNSGSPGPLYYLRSPPSMSIVDPNLHQERGTAIAPMIIDSVPVAHHHHQQQQHQHGVVPNSSNFDSTNTAGKRLRLFGVNMECASSSSSSPAEDHSHXAMSSSLPSSSRFGDQRGDTTTTTXSVLFDLDPSLQYHHHHRH* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1373 441 Pfam B3 DNA binding domain 107 211 IPR003340 GO:0003677
Amo16g1373 441 MobiDBLite consensus disorder prediction 30 79 - -
Amo16g1373 441 MobiDBLite consensus disorder prediction 354 370 - -
Amo16g1373 441 MobiDBLite consensus disorder prediction 385 423 - -
Amo16g1373 441 SMART B3_2 107 212 IPR003340 GO:0003677
Amo16g1373 441 CDD B3_DNA 105 194 IPR003340 GO:0003677
Amo16g1373 441 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 23 409 - -
Amo16g1373 441 MobiDBLite consensus disorder prediction 1 95 - -
Amo16g1373 441 Gene3D - 100 215 IPR015300 -
Amo16g1373 441 ProSiteProfiles B3 DNA-binding domain profile. 107 212 IPR003340 GO:0003677
Amo16g1373 441 MobiDBLite consensus disorder prediction 9 25 - -
Amo16g1373 441 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 409 IPR044800 GO:0003700
Amo16g1373 441 SUPERFAMILY DNA-binding pseudobarrel domain 104 212 IPR015300 -
Amo16g1373 441 MobiDBLite consensus disorder prediction 344 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1373 Amo-Chr16 24053468 24054883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1373 97 387 RAV Transcription Factor Family AT2G46870 48.333 1.02e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo16g1373 B3 4.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1373 - - lja:Lj3g3v2520080.1 372.474