Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1359 ATGCAAATGCAGGAGGAGCAGATCATGAAGCTGAAGGACGAGAATGCGCCACCGGGGGACGTGGTGGTTAGGTGGGAGAAGTTTCTCCCTCGGATGGCGCTCAGAGTGTTGCTTGTTGAAGCCGATGATTCTACTCGCCAGATCATATCCGCCCTTCTCCGAAAATGCAGTTACAAAGTTGCTGCAGTTCCTGATGGCCTAAAGGCATGGGAGACATTGAAGAGCAAAGCACCTGAGATTGATCTTATATTAACAGAAGTGGAGTTGCCGTCAATATCTGGATTTTCACTTCTCACGTTGATAATGGAGCATGACATCTGCAAAACCATTCCTGTCATAATGATGTCTACTAATGATTCAATTAGCATGGTATTCAAATGCATGCTGAAAGGTGCGGCTGATTTTCTTATAAAACCCATTCGAAGGAATGAGCTACGGAACTTATGGCAGCACGTATGGAGAAGGCATGCTATTAGCCGGTCCCATCAGAGTTTAACATTGCCGCAGAATAAATTTGAAGTTGCTGCAGAAAACAATGCTACGAGCAATAATTCTAGTGGTTCTGTGGCTTCCCCACAGAAAAATAAAGAGTACAGTGGTGAGAAAGCAAGTGATGCTCAAGTTACGTCCCCGTTGAAAAGTTCCTCGAAGTTGATTGATATTGACACAGTGAAGCATGAAGAGGCTACCAAATTTGAAAGGGAATCAGCTACGCACTATAGTGAATCCGGTGAGAAATCAAATATGTTTGTATCCGATGCTACAAGGTGCTACAAAACTCTTAATGCGACAGGTGTAAGGCTAGATCAAGGCTTTGATTGTGATGAAACAGAAAATGAAGATGAAGTTTTAAGAACAGAATTAAGCAAAGCCCATCCTCATATTAATACCGAGATCAACAAATGCAATGATACACTGGTAGAACCTTCTACAGGGGCAATTGACTTGATTGCTACATTTGAGAATTCTCCAAAGAGCACGGGTGAAATTTGTAGTTTCAATGCTGACAACGCATTCAAGTCAGTTTTTGATACACAATTGGGACTTTCTTTAAGAAGAGATTCTCCTAGTAGCTCATGTAAGCCTGCACTGGAAGAAAGGAAAATATTGAACCATTCAACTGCATCGGCCTTTTCTTGGTATAGCAGCAGTAAGTTGTTGCAGCCCCTTTTCCCATCTCAATCAATTACTTCTGCTAAACTATCAAGTGTCAGTTGTAATTCTCATGAATCCCATAAGTCATCTGAAAATACACATACTCATCATCAGCACGGTGATAAAATTCAAGATAAACAGAACATGACCACTTTGGTCACTCAGACTGGCCAAATTGAACCAAAATCACCAAACAATGAACTTGGATTCTCTTGTGCTACTGGTGTTTCTTCTGATCATAACTCTATGAGGCATGCCAATGCTTTCCCTCGTATGCCCTGTGCACAATCAGCTGTGCATCCCATATGGACTCCGAAACCAGTGTCCAAGAAAGAAAATTCTTCATTTCCCACTAGTGCTTCTTCTCATTCCAACCCTGAAACTGACAATTCAGAATGTCATCGATGCTCGGATGATGCCACCTACACTTCTGATCAAAATGGAAATGATCAAAGCAAGATGGATTGTGTTAGGCATGACTCTGTTGCTGCTGGTGGTCAGAGTGCAAGTACTAGTTTTTACCTTGAAAATCATAATAGCAGCGGTGCATATGGAAGCATAGGCAGCGGAAGTGATGCAAATGCTACTTCAGCTGTGGTAACTAAGAACAACCCCGAAAGTTTTGCTGATAGTAGTCAACATAGTCATGATGGATTCAGAGGGACAGATTCTCATCGGAGCAGCCAAAGAGAAGCAGCTCTAACAAAGTTTCGGCTGAAGAGGAAGGAGAGATGCTACGAGAAGAAGGTTCGATATCAGAGCCGGAAAAGACTGGCAGAGCAGCGCCCTAGGGTGAAAGGGCAGTTCGTTCGCCAGGTGCAAAATGATCATCCAGTAGCAGGTGTAGGTGGCTCCTGA 2013 0.4302 MQMQEEQIMKLKDENAPPGDVVVRWEKFLPRMALRVLLVEADDSTRQIISALLRKCSYKVAAVPDGLKAWETLKSKAPEIDLILTEVELPSISGFSLLTLIMEHDICKTIPVIMMSTNDSISMVFKCMLKGAADFLIKPIRRNELRNLWQHVWRRHAISRSHQSLTLPQNKFEVAAENNATSNNSSGSVASPQKNKEYSGEKASDAQVTSPLKSSSKLIDIDTVKHEEATKFERESATHYSESGEKSNMFVSDATRCYKTLNATGVRLDQGFDCDETENEDEVLRTELSKAHPHINTEINKCNDTLVEPSTGAIDLIATFENSPKSTGEICSFNADNAFKSVFDTQLGLSLRRDSPSSSCKPALEERKILNHSTASAFSWYSSSKLLQPLFPSQSITSAKLSSVSCNSHESHKSSENTHTHHQHGDKIQDKQNMTTLVTQTGQIEPKSPNNELGFSCATGVSSDHNSMRHANAFPRMPCAQSAVHPIWTPKPVSKKENSSFPTSASSHSNPETDNSECHRCSDDATYTSDQNGNDQSKMDCVRHDSVAAGGQSASTSFYLENHNSSGAYGSIGSGSDANATSAVVTKNNPESFADSSQHSHDGFRGTDSHRSSQREAALTKFRLKRKERCYEKKVRYQSRKRLAEQRPRVKGQFVRQVQNDHPVAGVGGS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1359 670 MobiDBLite consensus disorder prediction 490 518 - -
Amo16g1359 670 PANTHER PRR RESPONSE REGULATOR 27 213 - -
Amo16g1359 670 SUPERFAMILY CheY-like 34 165 IPR011006 -
Amo16g1359 670 MobiDBLite consensus disorder prediction 412 429 - -
Amo16g1359 670 CDD psREC_PRR 36 139 - -
Amo16g1359 670 ProSiteProfiles CCT domain profile. 615 657 IPR010402 GO:0005515
Amo16g1359 670 PANTHER PRR RESPONSE REGULATOR 211 654 - -
Amo16g1359 670 Gene3D - 32 263 - -
Amo16g1359 670 ProSiteProfiles Response regulatory domain profile. 35 153 IPR001789 GO:0000160
Amo16g1359 670 MobiDBLite consensus disorder prediction 493 512 - -
Amo16g1359 670 Pfam Response regulator receiver domain 36 147 IPR001789 GO:0000160
Amo16g1359 670 Pfam CCT motif 615 657 IPR010402 GO:0005515
Amo16g1359 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR 211 654 IPR045279 GO:0009736
Amo16g1359 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 213 IPR045279 GO:0009736
Amo16g1359 670 MobiDBLite consensus disorder prediction 407 432 - -
Amo16g1359 670 MobiDBLite consensus disorder prediction 590 621 - -
Amo16g1359 670 MobiDBLite consensus disorder prediction 179 211 - -
Amo16g1359 670 MobiDBLite consensus disorder prediction 601 621 - -
Amo16g1359 670 SMART REC_2 34 149 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1359 Amo-Chr16 23767138 23771144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1359 610 659 Response Regulator Gene Family AT5G24470 84.000 9.92e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Amo16g1359 Response_reg 2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1359 K12130 - gmx:100779346 820.461