Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1344 ATGCGATCTGCGTTCTCACTTCTAGCCCGACGCAGAGGTTTTAGATCGAATGCTCCAGATGAAAGAGTGATTAGTGTTGCTGCGTATGAGAAAGTTAAATCGTTGATTAAACAATCAAGGAATCGGATCAATGTGATAAGGAGAAAGAGAAATTCAGCAAAGAAGTTTCTTAAGCGAGACAGCATTGATCTGCTTGCGAATCATTTCCAGCCACCAATGCTTGAAAATTCAAAAGTACTTAGGAGAATCAGCGACTTGAAAGGACCAGATTCTTATTTTCCACCACTTACAAAAATAGATAATATGTATGAAGGCTATGCTATAGACTGGAGTCTTCTTGTTCCTGGAGCCGGAAGGCTTGTATCTGCTACATTTTATAAACATGGAATATTGACAATACTCCATTTATTGGGCATACTGCTAGTGTTGAAGATCTGCAAAATTCCATCAGAGCAAAATCTTCCAAGTAAAATGAAGACAGAATTCAATTCAAGAATGGCAGTTACACATGTTGATCTCGAACCAAACACAGGGAAGACATGTTTGATGAGCAGCAAAACTGGTGTATTCCTCGTACTTGTCACAATCCTATTGGGACTCTCCTCCTTCACTCTCTACCTCATAGCAGAAGCCACACGTTCTCAGGATCATGGGATTGGATTCATCACTCATTTATGGTGGACTTTAGTACCTTGCGGCCAAATAACTGAGGAAGAAGTAAGAGCTGTTGCAGCTTGTGCAGGGGAGGAAGAGGTTTGTGCTATGAAGTTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGATCGATCAAAGCTTTCAAAATTCGATTGGAAATATATCATAATTGATGAAGCACAGAGAATGAAGGATAGGGATTCAGTCCTGGCCCGTGATCTTGATAGGAAAACTCCCAATCAAGATAAAAATAATAGTAAAAACTGTATTTTTAAAAGATAA 963 0.3904 MRSAFSLLARRRGFRSNAPDERVISVAAYEKVKSLIKQSRNRINVIRRKRNSAKKFLKRDSIDLLANHFQPPMLENSKVLRRISDLKGPDSYFPPLTKIDNMYEGYAIDWSLLVPGAGRLVSATFYKHGILTILHLLGILLVLKICKIPSEQNLPSKMKTEFNSRMAVTHVDLEPNTGKTCLMSSKTGVFLVLVTILLGLSSFTLYLIAEATRSQDHGIGFITHLWWTLVPCGQITEEEVRAVAACAGEEEVCAMKFNVLVTTYEFIMYDRSKLSKFDWKYIIIDEAQRMKDRDSVLARDLDRKTPNQDKNNSKNCIFKR* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1344 320 Pfam SNF2-related domain 253 298 IPR000330 GO:0005524|GO:0140658
Amo16g1344 320 MobiDBLite consensus disorder prediction 301 320 - -
Amo16g1344 320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 306 IPR027417 -
Amo16g1344 320 PANTHER SNF2/RAD54 HELICASE FAMILY 254 303 - -
Amo16g1344 320 Gene3D - 227 308 IPR038718 -
Amo16g1344 320 PANTHER ATP-DEPENDENT HELICASE BRM 254 303 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1344 Amo-Chr16 23541818 23546213 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo16g1344 SNF2_N 3.9e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1344 - - aip:107619011 265.388