Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1327 ATGTCCGAGGGTGCGGAGGTCAATGAGCGTGTCGACATTGATGAGGAGAATTATATGGAAGAGATTGATGATGATGTTGAAGAACAGATAGATGACCATGGACAAGAAGCACCTGAACCTCCACATGAACACAAGGGGTCACCTGCTGAGGCTGCTGCTAAAGATCAGTTGCCTGAACAAGAACAAGAAAGAAGTGACACTGCTGCTGAAATTCTCCAAGATGGGCAGAAACCATCTTCTGTCAATGAAGATGAGGAGAAGGAAAAGCATGATGAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTCTTCATTGGTGGGCTTCCTCGCGATGCCAATGAAGATGATTTGAAGGCATTGTGCGAGCCAATGGGTGACGTTCTAGAGGTGCGACTAATGAAGGACAAGGACACCGGCGAAAACAGGGGTTATGCTTTTGTGGCTTTTAAAACAAAGGAGGTAGCACAAAAGGCCATTGAAGACATACACAACAAGGAATTTAAGGGCAAAACCTTGAGGTGTTCACTGTCTGAAACAAAACACAGATTGTTCATTAGTAACATTCCAAAGACTTGGACGGAGGATGAGTTCAGGAAACATGTCGAGGCTGTTGGTCCGGGTGTTGAAAACATCGAGCTCATCAAGGACCCCCAAAACCCCACTAGGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGACTATTCGCGGCAAAAGATGTCAATTGCAAGTTTTAAGCTGGGTGGTAATACCCCAAATGTCACATGGGCAGATCCAAAGATCTCACCTGATCATTCTTCATCTTCACAGGTTAAAGCTCTATATGTTAAAAACATACCTGAGAATGTTACTACTGAACAACTAAAAGAACTATTCCGGCGACATGGAGAAGTGACAAAAGTGGTCATGCCACCTGGTAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGCGGTCAAGTGTATTGAAAGCTGTCAAAGATACAGAGAAATATGAAATTAATGGCCAAGTGCTTGAAGTTGTTCTTGCCAAGCCTCAAACTGATAGAAAAGCTGAAGTTAGTTATGCCTACAATCCTGTACTTCATCCAAGCCATCTTATACATCCCGGATATGGTAGTTTTTCTGGAAATCTTTACGGCTCTTTAGCTGCAGGATATGGTGTTGCTACAGGTTATCAACAGCCAATGATTTATGGGAGAGGTCCAATGCCGGCAGGAATGCAGATGGTTCCAATGGTATTACCAGATGGTCAAATCGGCTATGTCCTTCAACAGCCTGGTGTACAGGCACCACCGGCCCGACCTCGCAGAACTGATCGGAACAATGGTCCAAGTGGTCAACCGGGCCGAGCAGGAGGTGGTGGCAGCGAAGAAAGCAACCGTAATAGAAGCAAAAATGATTTCTGA 1431 0.4465 MSEGAEVNERVDIDEENYMEEIDDDVEEQIDDHGQEAPEPPHEHKGSPAEAAAKDQLPEQEQERSDTAAEILQDGQKPSSVNEDEEKEKHDELLALPPHGSEVFIGGLPRDANEDDLKALCEPMGDVLEVRLMKDKDTGENRGYAFVAFKTKEVAQKAIEDIHNKEFKGKTLRCSLSETKHRLFISNIPKTWTEDEFRKHVEAVGPGVENIELIKDPQNPTRNRGFAFVLYYNNACADYSRQKMSIASFKLGGNTPNVTWADPKISPDHSSSSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSVLKAVKDTEKYEINGQVLEVVLAKPQTDRKAEVSYAYNPVLHPSHLIHPGYGSFSGNLYGSLAAGYGVATGYQQPMIYGRGPMPAGMQMVPMVLPDGQIGYVLQQPGVQAPPARPRRTDRNNGPSGQPGRAGGGGSEESNRNRSKNDF* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1327 476 CDD RRM3_hnRNPR_like 275 353 - -
Amo16g1327 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 346 IPR000504 GO:0003723
Amo16g1327 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 244 IPR000504 GO:0003723
Amo16g1327 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Amo16g1327 476 MobiDBLite consensus disorder prediction 13 32 - -
Amo16g1327 476 Gene3D - 8 181 IPR012677 -
Amo16g1327 476 PANTHER GEO13361P1-RELATED 2 472 - -
Amo16g1327 476 MobiDBLite consensus disorder prediction 33 70 - -
Amo16g1327 476 MobiDBLite consensus disorder prediction 1 97 - -
Amo16g1327 476 Gene3D - 182 262 IPR012677 -
Amo16g1327 476 Gene3D - 264 363 IPR012677 -
Amo16g1327 476 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 472 - -
Amo16g1327 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 263 IPR000504 GO:0003723
Amo16g1327 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 353 IPR000504 GO:0003723
Amo16g1327 476 SMART rrm2_1 102 175 IPR003954 GO:0003676
Amo16g1327 476 SMART rrm1_1 182 259 IPR000504 GO:0003723
Amo16g1327 476 SMART rrm1_1 102 175 IPR000504 GO:0003723
Amo16g1327 476 SMART rrm1_1 277 349 IPR000504 GO:0003723
Amo16g1327 476 MobiDBLite consensus disorder prediction 434 476 - -
Amo16g1327 476 SUPERFAMILY RNA-binding domain, RBD 96 180 IPR035979 GO:0003676
Amo16g1327 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Amo16g1327 476 MobiDBLite consensus disorder prediction 79 96 - -
Amo16g1327 476 CDD RRM_SF 103 175 - -
Amo16g1327 476 SUPERFAMILY RNA-binding domain, RBD 181 354 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1327 Amo-Chr16 23226861 23230509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1327 103 407 Eukaryotic Initiation Factors Gene Family AT1G71770 26.590 9.52e-19 87.4