LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo16g1310	ATGGGCCAGTGCTACGGCAAGCCCAATCCCACCGCCGGTAACCACCATGACGTCGACCCAGCCGCCGCAATTGAGGCCTCCGGGGAAGCATTTCGCTCCCCGCTCCCCTCCTCCGCCGCCACCAACGGCTTCCCGTCGGTGAAGAACACGCCGGCTCGCTCGTCCTCGCATGCGAGCCCATGGCCAAGCCCGTACCCTCACGGCGTGAACGCCAGCCCGTTGCCGGGGGACGGGGTGTCGCCGTCGCCGGCCAGGGGGACTACGCCGAGGAGGTTCTTCAGACGGCCGTTTCCTCCTCCGTCTCCGGCGAAGCACATAAGGGCGTCGCTGGCGAAGAGGCTGGGGCAGGGTAAGCCGAAGGAGGGGCCGATACCGGAGGATCGAGGGGCGGAGGCGGAGGCGGTGGCTGAGCAGTCTCTTGACAAGAGCTTCGGTTATGGAAAGAACTTTGGAGCTAAGTATGAGCTGGGAAACGAAGTGGGGCGAGGGCATTTTGGTCATACCTGCTCCGCCAGGGTGAAGAAGGGTGAGCTCAAAGACCAGCTTGTTGCTGTCAAAATCATTTCCAAGGCCAAGATGACCACGGCAATAGCAATTGAAGATGTTCGTAGAGAGGTGAAGCTATTAAAAGCTCTATCTGGCCATAAGCATCTTGTCAAATTTTATGATGCTTACGAGGATGCCAACAACGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACCGGATTTTGTCAAGGGGGGGAAGATATACAGAGGAGGACGCCAAGGTTATAGTTTTGCAGATTCTAAGTGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTCCACCGTGACCTAAAGCCTGAGAATTTTCTCTTCACTTCAAGGAGCGAAGATGCTGATATGAAGCTTATAGATTTTGGTCTATCTGATTTCATCAGGCCAGATGAACGGTTGAATGACATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCATATAGTCTAGAAGCAGATATATGGAGTATCGGTGTTATCACCTACATCTTACTATGTGGAAGTCGGCCTTTCTGGGCTCGAACAGAATCTGGAATTTTTCGTGCAGTGCTCAGAGCTGATCCCAACTTCGATGATCTACCCTGGCCAACTGTGTCTTCAGAGGCTAAGGACTTTGTCAAAAGGCTCTTAAACAAGGATTACAGGAAAAGAATGACCGCTGTCCAAGCACTGACTCACCCTTGGTTAAGGGATGACAGTCGTCCTATTCCATTAGATATATTAATTTATAAACTAGTGAAGTCATATCTTCATGCGACTCCATTCAAGCGTGCAGCAGTGAAGGCCCTTTCAAAAGCCTTGACAGAGGATGAGTTAGTTTATCTTAGAGTACAATTCAGATTGTTGGAACCAAATAGAGATGGGCATGTCTCCCTTGACAATTTCAAAATGGCTCTTGCTCGTCATGCCACTGATGCCATGAGGGAGTCAAGGGTTCTCGAAATCATACATGCGGTGAGCTATTCCCATTGCTTTGGAATTATTGAGCACACAAGTTCCAAGCTATGCTATTCATTTTTAAACGTTTTGCCCAAACAGCAAGAGTCTTCCTGCTACCCTAATCCCATATTCATTTTCTGGGTTGAATAA	1650	0.4988	MGQCYGKPNPTAGNHHDVDPAAAIEASGEAFRSPLPSSAATNGFPSVKNTPARSSSHASPWPSPYPHGVNASPLPGDGVSPSPARGTTPRRFFRRPFPPPSPAKHIRASLAKRLGQGKPKEGPIPEDRGAEAEAVAEQSLDKSFGYGKNFGAKYELGNEVGRGHFGHTCSARVKKGELKDQLVAVKIISKAKMTTAIAIEDVRREVKLLKALSGHKHLVKFYDAYEDANNVYIVMELCEGGELLDRILSRGGRYTEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSLEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPTVSSEAKDFVKRLLNKDYRKRMTAVQALTHPWLRDDSRPIPLDILIYKLVKSYLHATPFKRAAVKALSKALTEDELVYLRVQFRLLEPNRDGHVSLDNFKMALARHATDAMRESRVLEIIHAVSYSHCFGIIEHTSSKLCYSFLNVLPKQQESSCYPNPIFIFWVE*	550

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo16g1310	549	Pfam	Protein kinase domain	154	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo16g1310	549	SUPERFAMILY	EF-hand	442	504	IPR011992	-
	Amo16g1310	549	MobiDBLite	consensus disorder prediction	119	135	-	-
	Amo16g1310	549	Gene3D	Transferase(Phosphotransferase) domain 1	243	426	-	-
	Amo16g1310	549	MobiDBLite	consensus disorder prediction	1	135	-	-
	Amo16g1310	549	SMART	serkin_6	154	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo16g1310	549	ProSitePatterns	Protein kinases ATP-binding region signature.	160	186	IPR017441	GO:0005524
	Amo16g1310	549	Gene3D	-	434	454	-	-
	Amo16g1310	549	ProSiteProfiles	EF-hand calcium-binding domain profile.	457	492	IPR002048	GO:0005509
	Amo16g1310	549	ProSiteProfiles	Protein kinase domain profile.	154	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo16g1310	549	PANTHER	SERINE/THREONINE-PROTEIN KINASE	52	506	-	-
	Amo16g1310	549	CDD	STKc_CAMK	153	415	-	-
	Amo16g1310	549	Gene3D	-	455	506	-	-
	Amo16g1310	549	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	278	290	IPR008271	GO:0004672\|GO:0006468
	Amo16g1310	549	MobiDBLite	consensus disorder prediction	34	61	-	-
	Amo16g1310	549	PANTHER	CDPK-RELATED KINASE 3	52	506	-	-
	Amo16g1310	549	SUPERFAMILY	Protein kinase-like (PK-like)	153	439	IPR011009	-
	Amo16g1310	549	Gene3D	Phosphorylase Kinase; domain 1	148	242	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo16g1310	Amo-Chr16	22914127	22920423	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo16g1310	1	507	EF-hand Containing Proteins	AT3G50530	58.759	0.0	617

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Amo16g1310		Pkinase	2.2e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo16g1310	-		-	rcu:8266291	847.425