Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1305 ATGCCTGCAATGGTCATACTCTTGGTAGCCCTCGCCGTTCTGCTCCTCTTCTTCTCCTTCTCCAAGAAGCTATGGAGGGGCGTGGAAGACTGGTTCCACGTGTACCAGTTCTTGAAGGTCCCACAGCACAACCACACAACCTTGCAGGAGAATCATCTCTACAGAAAGGTCTCCCTCTACTTGCATTCTCTCCCTTCCATCGAAGACTCTGATTTCACAACACTCCTTACTGGCAAGAAGTATAACGACATCCTTCTCTGCCTCGGCCCCYACCAAACCATTCAGGACCGTTTTCTCGGAGCCACCGTCTTCTGGCACAACCAAACCGACGRCGACGACGGTGCTGATCAGAATCCCCAATTCAATCGCGCCAGAGCCTTCGTTCTCAAGATAAGAAAAGTGGACAAACGCCGAATCCTCCGCCCCTACCTTCAYCACATTCACGCCGTCGCCGACGATATTGAGCAGCAAGGGAACCGCGATCTGCGGCTATTCATGAACACCGCTGCCGCTGCACAGGGAYGAGGAAGGTGGAGATCAGTTCCRTTTACCCACCCCTGCACCTTTGAAACCCTTGCCATGGAGTCCGATCTCAAGAACCGGGTGAAATCCGACCTCGAATCGTTCCTCAGGGCGAAGCAGTACTACAACCGGCTTGGCCGAGTGTGGAAACGGAGCTTCCTCTTATACGGTCCTTCCGGAACCGGAAAATCGAGCTTCGTCGCTGCCATGGCCAATTTCCTTCGCTACGACGTGTATGACATCGACCTCTCCAAGGTTCCCAGCGATTCGGATCTGAAACTGCTCCTACTACAGACGACGCCGAAATCAGTGGTYGTGGTGGAGGACCTCGACCGGTTCCTGGCGGAGAAATCCACGGCGGTGAGCRCTTCAGGGATGCTGAACTTTATGGACGGAGTAGTGAGCTCGTGCTGRGGCGAGGAGAAGGTGATGGTGTTCACGATGAACAGCAAGGAACACGTGGARCCGAACCTTCTTCGGCCGGGTCGGYTCGACGTTCACATCCACTTTCCCTTGTGCGATTTCACGGCGTTCAAGACGATGGCGAATAACTACCTTGGAGTGAAGGAGCACAAGCTGTTCCCTCAGGTTCAAGAGATTTTCCAGAACGGRGCGAGTCTCAGCCCCGCCGAGATCGGCGAGTTGATGATCGCTAACCGAAACTCACCGAGTCGGGCCATCAAATCGGTGATCACCGCCTTACAAACGGACGGCGATGGGAGAGGGTCCGGGAGTCCGATCGTACGGCATACAGGGGAGGATGACGTGGACGAACCTGACGCTGTTATGTGTGGTGAGGGTCTCCACACGGTTAAGGATTTGCGTAAATTGTACGGCTTTTTCAGGTTGAAGAATACCAGAAGATCCCCCTCCTCCAACACCAGCTCAATGCCCAGCCCCTTGAGATGA 1431 0.5409 MPAMVILLVALAVLLLFFSFSKKLWRGVEDWFHVYQFLKVPQHNHTTLQENHLYRKVSLYLHSLPSIEDSDFTTLLTGKKYNDILLCLGPXQTIQDRFLGATVFWHNQTDXDDGADQNPQFNRARAFVLKIRKVDKRRILRPYLHHIHAVADDIEQQGNRDLRLFMNTAAAAQGXGRWRSVPFTHPCTFETLAMESDLKNRVKSDLESFLRAKQYYNRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLRYDVYDIDLSKVPSDSDLKLLLLQTTPKSVVVVEDLDRFLAEKSTAVSXSGMLNFMDGVVSSCXGEEKVMVFTMNSKEHVEPNLLRPGRXDVHIHFPLCDFTAFKTMANNYLGVKEHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIKSVITALQTDGDGRGSGSPIVRHTGEDDVDEPDAVMCGEGLHTVKDLRKLYGFFRLKNTRRSPSSNTSSMPSPLR* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1305 476 Gene3D - 344 408 - -
Amo16g1305 476 Gene3D - 180 343 IPR027417 -
Amo16g1305 476 MobiDBLite consensus disorder prediction 411 430 - -
Amo16g1305 476 Pfam Domain associated at C-terminal with AAA 22 106 IPR025753 -
Amo16g1305 476 CDD AAA 224 346 - -
Amo16g1305 476 PANTHER BNAC04G00800D PROTEIN 6 432 - -
Amo16g1305 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 407 IPR027417 -
Amo16g1305 476 Pfam ATPase family associated with various cellular activities (AAA) 228 346 IPR003959 GO:0005524|GO:0016887
Amo16g1305 476 PANTHER BCS1 AAA-TYPE ATPASE 6 432 - -
Amo16g1305 476 SMART AAA_5 223 348 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1305 Amo-Chr16 22453846 22456091 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1305 - K08900 gmx:100805212 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1305 16 22453846 22456091 Amo12g0132 12 1955073 1957288 PCT
Amo16g1305 16 22453846 22456091 Amo02g0474 02 5765125 5767316 PCT
Amo12g0132 12 1955073 1957288 Amo16g1305 16 22453846 22456091 PCT
Amo02g0474 02 5765125 5767316 Amo16g1305 16 22453846 22456091 PCT