Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1298 ATGATGGTTCTGGATGCATTGAATTCTGGTCCTACTGCAGAAGCCATTTCTCAAATTATAGATACCATCGCTGAGTTTCTATATTATGCTAGTGATGTTCTTGTGAAGAAGGATAGTTTTAAGGAACTTTCAGCTTACTTGGAAAAAATTTCACCCATTTTAAAAGCATTGAAGAAAGGAAAAGTCAGCGATTCTGAGAAATTCAACCATGCCATTGAGATTCTGAGTCGTGAAGTTAGAGATGCAAAGCAACTGGCTGAAGAATGCAGCAAGAAGAACAAGGTATATCTCCTAATGAACTGCAGAACCATTATCAAGCGCCTCCAAAATAGCACTAGTGAGATTAGCAGGGCAATTGGTCTTCTTCCTTTGGCCACACAAGGCCTTTCTAATGGAATAATTGAAGAAATTATAAAGCTATGTGAGAATATGCAGGCAGCTGAGTTTAAGGCAGCCATAGCAGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATACAGGAAAAGAATGTAGATCGCTCCTATGCAAATGCTTTGTTGGTTCTCATTGCAGATTCTGTTGGGATTACAAATGAGAAATCAACAATGAAGAAGGAACTTGAAGAGTTCAAGAGTGAAATCGAAAATGCCAGGCTAAGGAAGGACCTAGCTGAGGCCATACAAATGGATCAGATCATTGCTTTGTTAGAAAGAGCTGATGCAGCTTCATCACCTAGGGAAAAGGAACGCAAGTACTTTGACAAGCGCAGATCTTTGGGAAGCCAACCCTTGGAACCATTACAGTCTTTTTATTGCCCCATTACCCGGGATGTCATGGTTGATCCTGTGGAAACTTCATCAGGTCAAACATTTGAGAGAAGTGCAATTGAGAAGTGGTTTGCAGATGGAAACAAATTGTGTCCTCTAACCATGGTTCCTTTAGACACATCAGTTTTGAGACCCAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGATAGAAATACAATGATTACAATTGCTTCAATGACTGAAAAAATTCAATCAGGAGATGATGAGGAAGTACTGCATTGTTTACAGAAGCTTCATGACTTGTGCGAACAAAAGGGCCAGCACAGAGAATGGGTTTTACTGGAGAATTACATTCCAGTTCTTATCCGATTACTCAATGCTAAAAACCGTGATGTCAGGAATAATGCCCTTGTCATCCTTTGCTTGCTGGCAAAGGATAGTGAAGATGCTAAGGAAAGAATTGCTAAAGTTGATAATGCAATTGAGTCTATCGTGCATTCTCTTGGTCGTCGTTTGGGGGAAAGGAAATTAGCAGTGGCATTACTTCTAGAACTATCCAAATATGATTTACTGAGAGAACATATTGGAAAAGTTCAAGGTTGCATACTGTTATTGGTGACTATGTCCAGCAGTGATGACAATCAATCTGCTAGAGATGCAACAGAGCTGTTGGAAAAACTTTCATATTCTGACCAGAATGTTATACAGATGGCAAAAGCCAATTATTTCAAGCAGTTACTGCAGCGTCTCTCCACAGGGTCAGACGAGGTGAAGATGTTGATGGCCACGACTTTAGCGGAAATGGAGTTAACTGACCATAATAAGGAGTCCTTGTTTGAAAGTGGTATACTTGCTCCTCTTCTTCACTTGGTCTCACATAATGATGTTCAGATGAAAATAGTGGCCCTTAAAGCTCTTCAGAATCTATCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGACAAGGTGCAACACGTCCGCTACTTAACATTCTTTTCCAGCACAGCATTCCATCTTCAAGTTTGTGGGAACATGTAGCGCCAATAATTATGCAGCTTGCTGCATCGACGATGTCACAAGATGCACAGACACCAGTTTCATTGCTAGAATGTGATGAGGATGTTTTTAACCTTTTCTCTCTAATTACTTATAACGTGCCTGATGTGCGGCAATACACTATCCAGACTTTTTATGCCCTGTGCCAATCGCCCTCAGCTTCTTATATTAGAACCAAGCTAAGAGAGTGCACAGCTGTCCAAGTACTGGTTAAGTTGTTTGAGACTGAAAACCAAAAACTACGAGGAAGTGCGGTAAAGCTTTTCTCTTGCCTTGTAGAAGGTTGTGATGAAGCCATCATACTAGAGAATGTGAATGAGAAGTGCATTGAGACTTTGGCCAGAATCCTGAAATCATCTTCTGATGAAGAAGAAATAGTTTCTACTATGGGAATAATTTGCAGTTTGCCGGAAAATCACCAGATCACTCAGTGGCTTTTGGATGCTGGTGCCCTGGTGACTATTTATAACTATATCCAAGAAGGGAAGGACAAAGATCTTCAAAGAAGCAAGCTGGTAGAGACTTCTGTTAGTGCCCTATGTCGATTTACAGTGCCAACAAACTTGGATTGGCAAAAGAGAGCAGCAGAGATTGGGATTATAACTATTCTAGTGCAGTTGCTTGAAAGTGGAACCATGTTAACAAAACAACAAGCAGCATTGTCTCTTGCTCAGTTTTCTAAAAGTTCACAGGGGCTGAGCAGGCCATTGCCGAAGCGCAAGGGACTCTGGTGCTTCTCATCCTCGGCAGCTGAAAGTGGATGCTTAGTACATGGGGGCCTGTGCACTGTCAAAACCTCATTTTGCCTTTTGGAGGCTGATGCAGTAGTACCACTAACGAAGGTTCTTGGGGAATCTGATCCGGGAGCTTGCGAAGCTTCTTTAGATGCTCTATTAACTTTAATTGAAGGTGAAAGACTACACAGTGGTAGTAGAGTGCTTGCAGATGCAAATGCCATACCACTTATAATCAGATTCCTTGGTTCCCCTTCTCCTGGATTGCAGGACAAGTCTCTGCATGCTCTGGAAAGGATTTTTAGGCTAGTGGAGTATAAACAACAGTATGGACCCTCAGCTCAAATGCCTCTAGTTGACTTGACTCAACGCGGTAATGGTAGCATAAGATCCATGGCAGCTAGAATATTAGCACATTTGAATGTCCTGCATGATCAATCTTCATATTTCTAA 3018 0.4112 MMVLDALNSGPTAEAISQIIDTIAEFLYYASDVLVKKDSFKELSAYLEKISPILKALKKGKVSDSEKFNHAIEILSREVRDAKQLAEECSKKNKVYLLMNCRTIIKRLQNSTSEISRAIGLLPLATQGLSNGIIEEIIKLCENMQAAEFKAAIAEEEILEKIESGIQEKNVDRSYANALLVLIADSVGITNEKSTMKKELEEFKSEIENARLRKDLAEAIQMDQIIALLERADAASSPREKERKYFDKRRSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFADGNKLCPLTMVPLDTSVLRPNKTLKQSIEEWKDRNTMITIASMTEKIQSGDDEEVLHCLQKLHDLCEQKGQHREWVLLENYIPVLIRLLNAKNRDVRNNALVILCLLAKDSEDAKERIAKVDNAIESIVHSLGRRLGERKLAVALLLELSKYDLLREHIGKVQGCILLLVTMSSSDDNQSARDATELLEKLSYSDQNVIQMAKANYFKQLLQRLSTGSDEVKMLMATTLAEMELTDHNKESLFESGILAPLLHLVSHNDVQMKIVALKALQNLSSLKKNGLEMIRQGATRPLLNILFQHSIPSSSLWEHVAPIIMQLAASTMSQDAQTPVSLLECDEDVFNLFSLITYNVPDVRQYTIQTFYALCQSPSASYIRTKLRECTAVQVLVKLFETENQKLRGSAVKLFSCLVEGCDEAIILENVNEKCIETLARILKSSSDEEEIVSTMGIICSLPENHQITQWLLDAGALVTIYNYIQEGKDKDLQRSKLVETSVSALCRFTVPTNLDWQKRAAEIGIITILVQLLESGTMLTKQQAALSLAQFSKSSQGLSRPLPKRKGLWCFSSSAAESGCLVHGGLCTVKTSFCLLEADAVVPLTKVLGESDPGACEASLDALLTLIEGERLHSGSRVLADANAIPLIIRFLGSPSPGLQDKSLHALERIFRLVEYKQQYGPSAQMPLVDLTQRGNGSIRSMAARILAHLNVLHDQSSYF* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1298 1005 Gene3D - 630 996 IPR011989 -
Amo16g1298 1005 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Amo16g1298 1005 Coils Coil 193 220 - -
Amo16g1298 1005 Coils Coil 72 92 - -
Amo16g1298 1005 SUPERFAMILY RING/U-box 251 331 - -
Amo16g1298 1005 Gene3D - 330 430 IPR011989 -
Amo16g1298 1005 SMART arm_5 405 445 IPR000225 GO:0005515
Amo16g1298 1005 SMART arm_5 664 704 IPR000225 GO:0005515
Amo16g1298 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Amo16g1298 1005 SMART arm_5 529 569 IPR000225 GO:0005515
Amo16g1298 1005 SMART arm_5 706 745 IPR000225 GO:0005515
Amo16g1298 1005 SMART arm_5 363 403 IPR000225 GO:0005515
Amo16g1298 1005 Gene3D - 12 127 IPR036537 GO:0007166
Amo16g1298 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1005 - -
Amo16g1298 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1005 - -
Amo16g1298 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 329 IPR013083 -
Amo16g1298 1005 CDD RING-Ubox_PUB 263 304 IPR045210 -
Amo16g1298 1005 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Amo16g1298 1005 Pfam Armadillo/beta-catenin-like repeat 530 569 IPR000225 GO:0005515
Amo16g1298 1005 Gene3D - 431 629 IPR011989 -
Amo16g1298 1005 SUPERFAMILY ARM repeat 16 408 IPR016024 -
Amo16g1298 1005 SUPERFAMILY ARM repeat 333 1001 IPR016024 -
Amo16g1298 1005 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1298 Amo-Chr16 22291291 22296865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1298 246 1005 U-box Gene Family AT1G76390 28.293 4.61e-64 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1298 - - gmx:100799969 1462.97