Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1281 ATGGTAAGAGCTCCTTGTTGTTCAAAAGTTGGATTGCACAGAGGTCCATGGACTCCCCGAGAAGATGCATTACTCACCCAATATATTCAATCCCATGGSGAAGGCCAATGGAGATCACTCCCTAAAAGAGCTGGCCTTCTTAGATGCGGGAAGAGTTGCAGGTTGAGATGGATGAACTATCTGAGACCAGATATCAAGAGAGGCAACATAACACCCGAAGAAGACGACCTCATCATTAGAATGCATTCACTCTTAGGGAACAGGTGGTCCCTCATCGCTGGAAGGTTACCGGGAAGAACCGACAATGAAATAAAAAATTACTGGAACACCCACCTCAGCAAGAAGCTCCTCAGGAGTCAACCCAAGAAGAAGAAGCAGAAGAAGAAAGACGCACAAGCAGAGGAAGAGGAAGAGGCAGAGGCAAAGAAGAAGAACAAGACCGTCGTTTATTTACCCAAACCGATTCGAGTTATTCCAAGAACCAAAAGTACCCTAACCTTGGAGTCCAATTCAGGAAGCGCATCAACGAGCCATGAGAAACAAGAAGTTGCGAAAGAGGTAAATAATATTGATGACGTCATGATTTGCAGTAACGACGAAGAAGATGAGGAGCTTGGACTATTCCTCGGTGGTGATGGTGAAGATCAATACCATATTGACCAAGTAGTCAACGGATCTGATGACGTGGAATGCGGGTCCCCTGATTTTCTCGGGGATTGTGGATCCCTTGAGAAGTTGTATGAAGAATACCTTCAGTTGTTGAACATGGATGACGCCATTCCTGACCAATTCGATTCTTCTGCTAAAAATTTTTTACTGTAA 822 0.4465 MVRAPCCSKVGLHRGPWTPREDALLTQYIQSHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLLRSQPKKKKQKKKDAQAEEEEEAEAKKKNKTVVYLPKPIRVIPRTKSTLTLESNSGSASTSHEKQEVAKEVNNIDDVMICSNDEEDEELGLFLGGDGEDQYHIDQVVNGSDDVECGSPDFLGDCGSLEKLYEEYLQLLNMDDAIPDQFDSSAKNFLL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1281 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo16g1281 273 CDD SANT 16 61 IPR001005 -
Amo16g1281 273 Gene3D - 14 66 - -
Amo16g1281 273 MobiDBLite consensus disorder prediction 115 143 - -
Amo16g1281 273 PANTHER MYB TRANSCRIPTION FACTOR 122 257 - -
Amo16g1281 273 PANTHER MYB TRANSCRIPTION FACTOR 1 117 - -
Amo16g1281 273 SMART sant 66 114 IPR001005 -
Amo16g1281 273 SMART sant 13 63 IPR001005 -
Amo16g1281 273 MobiDBLite consensus disorder prediction 127 143 - -
Amo16g1281 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo16g1281 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo16g1281 273 Gene3D - 71 148 - -
Amo16g1281 273 CDD SANT 71 112 IPR001005 -
Amo16g1281 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo16g1281 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo16g1281 273 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo16g1281 273 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 117 - -
Amo16g1281 273 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 122 257 - -
Amo16g1281 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo16g1281 273 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1281 Amo-Chr16 21994517 21995569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1281 4 200 MYB Transcription Factor Family AT3G13540 52.792 1.55e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo16g1281 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1281 K09422 - gmx:778044 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1281 16 21994517 21995569 Amo12g0121 12 1762643 1764274 PCT
Amo12g0121 12 1762643 1764274 Amo16g1281 16 21994517 21995569 PCT