Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1269 ATGGAGATGATGGATCACAGAAACAACAGCGGTAACATGTACAATCTGTTCGTCAAGCACTTGGACGGGAAAACCTTAACCCTAATATTCCCTTCTCCAATCCTCTTCGCCAAAACCATAAAGGATCGCCTCTTCGACCTTACCGGCATCCCGCCGCACCACCAACGCCTCGTAACCGGTTTCCGCCACCTCAACGATGAAGGATCGGCCATCTGCTCGCCGGATGGCAGCAACATCTTCCCGACAGTGCGACTCCTTCTGCGGCTGAAGGGCGGCAAGGGAGGGTTCGGATCGCTGCTTCGAGGTGCGGCGACGAAGGCTGGGCAAAAGAAGACGAACAATTTTGACGCTTGCAGGGACATGAGTGGGAGAAGGCTGAGGCACGTGAACGCGGAGAAGAGGCTGGAGGAGTGGAAGGCGGCGGAGGAGGAGCGGCGGCTGGAGAAGGTTGCGGAGGATTTCCTGAAGAAGCAGATGAAGAAAGGTAAGAAGGGTGCTGGCGATGGAGAAGCTCACAAGTATGTTGCCAAGTATAGGGAAGAGTCTGAGCGCTGTGTCGCCGAGGTTGCAGAGTCTGTGAAGGAGGCTTTGAAGTCTCTCAATGGTAAGAGAAAGGGTTCTGAAGCTGCACTGGAGAAAGCTGATTCTAAGAAGTTGAAGATATGGATGGGGAAGAGAAAATTGAATGAAAGTGATAGTGACGATTCTGATGAGAGTGATGATGAAGGGGGGAATCAGAAATCCATTGTGTTGAATAGCCAGACTGAATCGGATACTAATAAGGCGGAAGGCAGTTCGGATTCAGTATCTTGTAAGAAACAGAGCGGAGACTCTTCTGGTGCAGGCTCTTGTGAAAGTGGATCTGAAGAGGAGAGAGAAACTGTACTAGAAGGCAAAGTAGAAGCTGTTGGATCCCCGAGTGGCGAGGCCACTGAGGCCAAACTCATTGATGCTGTTGAACCTGTTGTATATGAAGAGATGATGGGGGCTGCTACAATGCCTTGTTCAGAGTCAATAACTGTGATTAGTGTTGAAGATAATGGACATCAGGATTGCAATGCTGCTGTTGGTCAAGCCTCAGATAATCTAAGCTCAGAAAATTGGGCTGGTGCAAGCAAATCGAATGACATGGAGATTGATGAATCTCTTCAGCATAAAGCATTAGTCCATGAAGAAATCTCACCAAGCACTAGCATTCCCGCATTGGAGGAGCCTCTGAATTTTGAAGCTTTTAATTCAGCTGCAGAGCTTGAGGTTCTTGGCTTGGAAAGGTTAAAATCTGAATTGCAATCTCGTGGGCTGAAATGTGGAGGAACTTTGCAGGAGCGTGCTGCCAGGCTTTTTCTTTTGAAATCCACTCCACTGGAGAAAATTCCAAAGAAGCTGCTTGCGAAGAAATGA 1401 0.4882 MEMMDHRNNSGNMYNLFVKHLDGKTLTLIFPSPILFAKTIKDRLFDLTGIPPHHQRLVTGFRHLNDEGSAICSPDGSNIFPTVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAAEEERRLEKVAEDFLKKQMKKGKKGAGDGEAHKYVAKYREESERCVAEVAESVKEALKSLNGKRKGSEAALEKADSKKLKIWMGKRKLNESDSDDSDESDDEGGNQKSIVLNSQTESDTNKAEGSSDSVSCKKQSGDSSGAGSCESGSEEERETVLEGKVEAVGSPSGEATEAKLIDAVEPVVYEEMMGAATMPCSESITVISVEDNGHQDCNAAVGQASDNLSSENWAGASKSNDMEIDESLQHKALVHEEISPSTSIPALEEPLNFEAFNSAAELEVLGLERLKSELQSRGLKCGGTLQERAARLFLLKSTPLEKIPKKLLAKK* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1269 466 SUPERFAMILY Ubiquitin-like 9 68 IPR029071 -
Amo16g1269 466 PANTHER SPLICING FACTOR SF3A-RELATED 13 465 - -
Amo16g1269 466 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 13 465 - -
Amo16g1269 466 MobiDBLite consensus disorder prediction 228 297 - -
Amo16g1269 466 Gene3D - 5 94 - -
Amo16g1269 466 MobiDBLite consensus disorder prediction 245 285 - -
Amo16g1269 466 Pfam Replication stress response SDE2 C-terminal 402 465 - -
Amo16g1269 466 Coils Coil 197 217 - -
Amo16g1269 466 Coils Coil 412 432 - -
Amo16g1269 466 Pfam Silencing defective 2 N-terminal ubiquitin domain 15 163 IPR024974 -
Amo16g1269 466 ProSiteProfiles Ubiquitin domain profile. 14 92 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1269 Amo-Chr16 21720372 21723153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1269 399 465 C2H2 Transcription Factor Family AT5G06160 46.269 2.46e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1269 K25059 - gmx:100781694 538.11