Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1267 ATGAATGCATGGGAACCAAAATTTGTTCGGTTTGAAGACTGGAGGTCGACATCATCGGAGCAAGAGAGTTCTGTTAATAATGGATATAATGAAAGAAAAGGTATGCCAAGTGTAGGTGCTGTTTTGAAGAGTATTGGAAGAAAACTGGAGAGTGGTTCCGAAAAGTTCAAGAACTTGAGGAAACCTTCAACTGTTCATCCTGTAAGTGATAGACCAAAAGAGAAACTGGCTTCTAGAAGAAGCAACATTCTTGATCCACAAGGACGAACCCTTGAAAAATGGAACAAGATTTTTGTGATCACATGTGTGATGGCAATCTCTGTGGATCCGCTCTTCTTTTACATTCCAGTGATCAATGACAAAGAGAAATGTCTGAATTTGGATGGCACGTTGCGAATCACCACTAGTGTTCTTCGAACATTCTTTGATCTTTTCTACATTCTTCGCATAATCTTTCAGTTTCGAACAGGGTTTATTGCCCCGTCTACTCGTGTTTTTGGAAGGGGTGAGGTGAACAACAATCCGGTGGCTATAATGAAAAGATACTTAAGTTCATACTTCATCATTGACATCCTCTCAATTATTCCAATTCCTCAGGTGCTGGTTTTAGCTGTAACTCCAAAGATGAAAAGCTCACCGTTTTTAGCAAAGGACTTGTTGAAGTATGTAATATTGGTCCAATATGTGCCAAGACTTCTGCGGATATGGCCATTATTCAGAGAAGTAACGAGAACTTCTGGTATATTGACCGAGACTGCATGGGCTGGAGCTGCTTTTAATCTTGGTCTTTATATGCTAGCAAGTCATGTTGTTGGAGCTAACTGGTATATGCTTTCAGTAGAATCAGAGGCAAGATGCTGGCGCAAAGTGATGGAAAATGATAGGGACTTTAAAGATTCATACCTGGGCTGTGGACCTAACAGAGAATTTGTCATACCACTTCTCAGAAAAAATACTACTTGCCCTTTCATTGACCCTGATCAAAACCAAGACCCAAATGCCTTTGATTTTGGAATATTCAATGATGCTTTAGAATCATCTGTGGTGAATTCCGAAACAGATTTTCTTAAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTACGCAATTTGAGTTCTGTTGGACAAAACCTCAAGACAAGCACCTACATTGTGGAGATACTCTTTGCCATCTTCATAGCCATTGCTGGATTGGTTTTATTTGCATTACTTATTGGAAACATGCAGAAATATTTGCAATCAACAACTGTTAGAGTTGAGGAGATGAGAGTCAAGAGGCGCGACGCAGAAAGATGGATGTCTCATCGTATGCTTCCTGAGAGACTGAGGGACAGAGTTAGACGGTATGAACAATACAAATGGCAACAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGCACCCTCCCTAAAGATCTAAGGAGGGACATAAAGCGTCATCTCTGCTTGGCTTTAGTTAAAAAAGTGCCAATATTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGTGATAGACTGAAGCCGGTCCTGTATACAGAAAAGAGCTACATTGTTCGCGAAGGAGATCCGGTTGATGAGATGCTCTTTGTCATGCGTGGAAACCTCGCTTCCATGACAACAAACGGTGGAAGAACTGGTTTCTTCAACTACACGGTTCTTGAGGCCGGTCAGTTCTGTGGCGAGGAGCTGTTAACATGGGCCCTGGATCCTCACTCCTCCACAAATCTTCCCACCTCAACCAGAACAGTAGAAACCATATCAGAAGTTGAAGCCTTTGCTCTCATGGCCGATGACTTGAAGTTTGTTGCTTCCCAATTTCGATGTCTTCAGAACAAACAACTTCAGCACACTTTCAGGTACTATTCGATGCAATGGAAGACATGGGCTGCCTGTTTCATACAAGTAGCATGGCGTCGATACTGGAAAAAGAAGGTTGAGAGGCAATTACGCGAAGCAGAAGACAGGCTACAAGGTGCCTTTGTAAATGAGGATGAATCCTCTCTAAGCCTTGGTGCAACCATATATGCATCACGGTTTGCTGCTAATGCATTGAGAAACTTGAGAGAAAACAGCGAACGCAACAAGAGAATGCCACAGAGACTACCTCTGCTTCCTCCAAAGCCCGCCGAGCCAGATTTCTCTACTCAGGAACACTAG 2157 0.4242 MNAWEPKFVRFEDWRSTSSEQESSVNNGYNERKGMPSVGAVLKSIGRKLESGSEKFKNLRKPSTVHPVSDRPKEKLASRRSNILDPQGRTLEKWNKIFVITCVMAISVDPLFFYIPVINDKEKCLNLDGTLRITTSVLRTFFDLFYILRIIFQFRTGFIAPSTRVFGRGEVNNNPVAIMKRYLSSYFIIDILSIIPIPQVLVLAVTPKMKSSPFLAKDLLKYVILVQYVPRLLRIWPLFREVTRTSGILTETAWAGAAFNLGLYMLASHVVGANWYMLSVESEARCWRKVMENDRDFKDSYLGCGPNREFVIPLLRKNTTCPFIDPDQNQDPNAFDFGIFNDALESSVVNSETDFLKKFFYCFWWGLRNLSSVGQNLKTSTYIVEILFAIFIAIAGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAERWMSHRMLPERLRDRVRRYEQYKWQQNRGVEEEALIRTLPKDLRRDIKRHLCLALVKKVPIFEKMDEQLLDAMCDRLKPVLYTEKSYIVREGDPVDEMLFVMRGNLASMTTNGGRTGFFNYTVLEAGQFCGEELLTWALDPHSSTNLPTSTRTVETISEVEAFALMADDLKFVASQFRCLQNKQLQHTFRYYSMQWKTWAACFIQVAWRRYWKKKVERQLREAEDRLQGAFVNEDESSLSLGATIYASRFAANALRNLRENSERNKRMPQRLPLLPPKPAEPDFSTQEH* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1267 718 ProSiteProfiles cAMP/cGMP binding motif profile. 490 574 IPR000595 -
Amo16g1267 718 SUPERFAMILY cAMP-binding domain-like 419 612 IPR018490 -
Amo16g1267 718 Pfam Ion transport protein 94 418 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo16g1267 718 Gene3D - 96 414 - -
Amo16g1267 718 SUPERFAMILY Voltage-gated potassium channels 85 412 - -
Amo16g1267 718 Gene3D Jelly Rolls 488 608 IPR014710 -
Amo16g1267 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 716 - -
Amo16g1267 718 Coils Coil 642 662 - -
Amo16g1267 718 CDD CAP_ED 490 614 IPR000595 -
Amo16g1267 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 716 - -
Amo16g1267 718 SMART cnmp_10 490 621 IPR000595 -
Amo16g1267 718 MobiDBLite consensus disorder prediction 690 718 - -
Amo16g1267 718 Gene3D Helix hairpin bin 417 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1267 Amo-Chr16 21713022 21718265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1267 1 717 Ion Channels AT5G53130 62.293 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1267 K05391 - gmx:100797784 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1267 16 21713022 21718265 Amo12g0176 12 2606722 2624617 PCT
Amo12g0176 12 2606722 2624617 Amo16g1267 16 21713022 21718265 PCT