Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1259 ATGGAATATACTGAGAATGGGGAACATGGTCTCATCAATGAACTCATCCAAGGGAAGGAGCTAGCAAAGCAGCTATGCAATCTCCTCTCTTCTTCTTCTTCTTCATCATCCAAAGAAATCTTAATTGACAAGATACTTTCCACCTATGAGAAAGCCCTCACCATGCTCAACTCTGACTCCACCATTACCAATCTCATTAATTCCCATTCTTCTTCTTCTTCTATAAATGGGAGCCCTTCAAGGAGTGACCTCATTGATAATGATGAAGAATTCAAGGACAAACCCCCCCTCAAGAAGAGGAAGACTATGCCCAAATGGACAGAGAAAGTGAAAGTATGTTCAAAAACAGGACTTGAGGGATCTTTGGATGATGGGTATAGCTGGAGAAAATATGGACAAAAGGATATTCTTCGAGCCAAGTTCCCAAGGTTAGAATCTTCACAATTCTTCTTTCTTTTCTCTTATTTGTTTCCTTGA 477 0.4004 MEYTENGEHGLINELIQGKELAKQLCNLLSSSSSSSSKEILIDKILSTYEKALTMLNSDSTITNLINSHSSSSSINGSPSRSDLIDNDEEFKDKPPLKKRKTMPKWTEKVKVCSKTGLEGSLDDGYSWRKYGQKDILRAKFPRLESSQFFFLFSYLFP* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1259 158 Pfam WRKY DNA -binding domain 123 143 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g1259 158 ProSiteProfiles WRKY domain profile. 117 143 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g1259 158 MobiDBLite consensus disorder prediction 68 99 - -
Amo16g1259 158 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 143 IPR044810 GO:0003700
Amo16g1259 158 SMART WRKY_cls 122 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g1259 158 MobiDBLite consensus disorder prediction 83 99 - -
Amo16g1259 158 MobiDBLite consensus disorder prediction 68 82 - -
Amo16g1259 158 SUPERFAMILY WRKY DNA-binding domain 121 143 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g1259 158 Gene3D WRKY domain 109 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g1259 158 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 4 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1259 Amo-Chr16 21498443 21499013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1259 12 143 WRKY Transcription Factor Family AT5G24110 41.176 1.88e-25 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo16g1259 WRKY 9.9e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1259 - - gmx:100790050 146.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1259 16 21498443 21499013 Amo12g0186 12 2746075 2749261 PCT
Amo12g0186 12 2746075 2749261 Amo16g1259 16 21498443 21499013 PCT