Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1240 ATGTGCAGAAAAACTGTGATATGCAAAGTTCGCGAACCCGGTGTTGGTGATACTCTCAATGCAGAAACAACACCCAAGGTTGTTCGTGTTTCAGTAATGGATCCGGAGATTACTGATTCTTCGAGTGACGAGGAGGAATATCAACAGTATCAAGGACGAAGCAAAGTGAAACACATTGTAAACGAGATAAGAATTTTGTATCCGCCATCTCACAACACCACCAAGGTGCAAAGATCTAAACAGCAACAACAACAGAACAAGGGTAAAAAGGTGGTTGTGGCTGCCATGAAAGCTGCTTCTTCTTCTCAAGAGGGTAGGAAGCTACGCGGGGTTAGGCAAAGGCCATGGGGGAGATGGGCTGCAGAGATCCGAGACCCTGTGAAGCGTACGAGGTTGTGGTTAGGAACCTACGACACTGCCGAAGAAGCCGCCATGGTTTATGACAGAGAAGCCATTCGCCTTCGAGGTTCTCATGCTCAAACTAATTTTCTCAAGCCTCCTAAGGAGGAAGAATATGAACAAATTTTTGATACCAACAATATGAAGAACATGCCTTCTCCTACTTCTCCCACTTCTGTTCTTCTATTTCAGTCTGATGGATCTGGAAGTAAGGTTTCAGGAGAGGATCAAAGCGAGTTCAGAGATGAATCTCCTTCTTCTTATTTTCAGGATGCATTGTTTTTAGATTCACCTTCTCTTGATTTTTGTTTATCGGATTTTGAGACTCCTCCCCCAATATTTCTTGATGAAACTTGCCTACCCCATCTTATTTTCAGTGACAGCAATTTCAGTGATGCTACCATTGAGCAGTCTATTGAATTATGTAACTTGGATGTAGATGATTACTTTTGCAGTCACACGCCAAATTAA 870 0.4287 MCRKTVICKVREPGVGDTLNAETTPKVVRVSVMDPEITDSSSDEEEYQQYQGRSKVKHIVNEIRILYPPSHNTTKVQRSKQQQQQNKGKKVVVAAMKAASSSQEGRKLRGVRQRPWGRWAAEIRDPVKRTRLWLGTYDTAEEAAMVYDREAIRLRGSHAQTNFLKPPKEEEYEQIFDTNNMKNMPSPTSPTSVLLFQSDGSGSKVSGEDQSEFRDESPSSYFQDALFLDSPSLDFCLSDFETPPPIFLDETCLPHLIFSDSNFSDATIEQSIELCNLDVDDYFCSHTPN* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1240 289 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 283 - -
Amo16g1240 289 CDD AP2 107 163 IPR001471 GO:0003700|GO:0006355
Amo16g1240 289 Gene3D AP2/ERF domain 107 165 IPR036955 GO:0003700|GO:0006355
Amo16g1240 289 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Amo16g1240 289 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Amo16g1240 289 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Amo16g1240 289 MobiDBLite consensus disorder prediction 197 216 - -
Amo16g1240 289 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Amo16g1240 289 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 4 283 - -
Amo16g1240 289 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Amo16g1240 289 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1240 Amo-Chr16 21064135 21065084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1240 4 198 AP2-EREBP Transcription Factor Family AT4G27950 44.660 2.84e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo16g1240 AP2 8.5e-13 CL0081