Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1216 ATGGCGAGGAGAGAGAGAGGTTTGTCTGCATCTGCGGCGGATGGAGGTGGTGGAAAAGCGGCGGAATTGAAGGAGAAGCTGAGGGGGCTGGTGAAGGCCATCGTGGAGGACGACGACTACACCACGCGCCACGCTGAAGACGCCATCGCCACTCTATCGACTCTTAGGGATTTGAAGAGAGCATCGCCCTCATCCTTCGATGATTTCAGCTTCCCCGTTCCTCCTGAATTTCGATGTCCCATTTCCACCGAGTTGATGACGGATCCTGTTATCTTGGCCACCGGACAGACTTATGATCGGGCATACATTCAGAGGTGGTTGGATGAAGGGCACAGAACATGCCCTCAAACCCAACAAGTCCTTTCTCACACTAATCTTACTCCAAATTACTTGGTCCGGGACATGATTGCGCAGTGGTGTAAAGAGCATGCAATTGAGATGCCAAAGCCGGTTCAGGACATCAACCAAGTAGTAAGTAATGCGGATAGAGACCACTTGGATTCATTACTTCATAAGCTGTCATTGTCTGTCCCTGATCAGAAAGAAGCTGCAAGAGAGCTTCGCCTCCTAACAAAGAGAATGCCTTCCTTTAGAACCCTCTTTGGGGAGTCCGTTGATGTGATTCCGCAGTTGCTCAGTCCATTATCGCCTAATACGGCTCATGTTCACCCCGATCTCCATGAGGACTTGATTACAACTATTCTAAATCTCTCGATTCAAGACGATAATAAGAAAGTATTTGGAGAGGATCCAACTGTCATTGCTCTTCTCATTGATGCCTTGAAATCCGGAACAATTCAAACAAGGAGCAATGCCGCAGCAGCCATTTTCACATTATCGGCTCTTGACTCCAACAAGCACATCATTGGAAAGTCTGGAGCCATCAAACATTTGCTTGACCTTTTAGAGGAGGGACAGCCATTAGCCGTGAAAGATGCTGCCTCAGCTATATTCAACCTATGTCTTGTGCACGAGAATAAAGGGAGGACCGTGAGAGAAGGTGCAGTCCGGGTCATTCTGAAGAAGATCATGGACCACATTCTAGTTGATGAGTTGCTCGCTATATTGGCACTCCTTTCCAGCCATCCCAAGGCCATTGAAGAAATGGGGGATCTCGGAGCTGTAGCCTTCTTGCTGGCTATCATTAGGGAGGGCACGTCAGAGCGAACCAAGGAGAATTGTGTTGCAATTTTATATACAATCTGTTACGGTGATAGAACAAAGTTGAAGGAAGTTAGAGAAGAAGAAAAAGCCAACGGTACCCTGTCGAAACTTGCGCGACACGGGACGTCAAGGGCAAAAAGGAAGGCTAATGGAATTCTTGAGAGGCTCAATCGATCACCCTGCTTAACACACACTGCTTAA 1365 0.4784 MARRERGLSASAADGGGGKAAELKEKLRGLVKAIVEDDDYTTRHAEDAIATLSTLRDLKRASPSSFDDFSFPVPPEFRCPISTELMTDPVILATGQTYDRAYIQRWLDEGHRTCPQTQQVLSHTNLTPNYLVRDMIAQWCKEHAIEMPKPVQDINQVVSNADRDHLDSLLHKLSLSVPDQKEAARELRLLTKRMPSFRTLFGESVDVIPQLLSPLSPNTAHVHPDLHEDLITTILNLSIQDDNKKVFGEDPTVIALLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLDLLEEGQPLAVKDAASAIFNLCLVHENKGRTVREGAVRVILKKIMDHILVDELLAILALLSSHPKAIEEMGDLGAVAFLLAIIREGTSERTKENCVAILYTICYGDRTKLKEVREEEKANGTLSKLARHGTSRAKRKANGILERLNRSPCLTHTA* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1216 454 MobiDBLite consensus disorder prediction 1 20 - -
Amo16g1216 454 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Amo16g1216 454 Pfam Armadillo/beta-catenin-like repeat 285 321 IPR000225 GO:0005515
Amo16g1216 454 CDD RING-Ubox_PUB 77 119 IPR045210 -
Amo16g1216 454 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Amo16g1216 454 PANTHER U BOX DOMAIN-CONTAINING 18 452 - -
Amo16g1216 454 SUPERFAMILY RING/U-box 62 150 - -
Amo16g1216 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 146 IPR013083 -
Amo16g1216 454 SUPERFAMILY ARM repeat 174 444 IPR016024 -
Amo16g1216 454 Gene3D - 203 347 IPR011989 -
Amo16g1216 454 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 18 452 - -
Amo16g1216 454 SMART arm_5 240 281 IPR000225 GO:0005515
Amo16g1216 454 SMART arm_5 282 322 IPR000225 GO:0005515
Amo16g1216 454 SMART arm_5 362 403 IPR000225 GO:0005515
Amo16g1216 454 Pfam U-box domain 73 144 IPR003613 GO:0004842|GO:0016567
Amo16g1216 454 Gene3D - 348 448 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1216 Amo-Chr16 20826139 20828899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1216 135 454 U-box Gene Family AT3G07360 58.359 2.07e-125 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1216 - - gmx:100806619 656.366