Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1201 ATGTTGAAGCTGTCTCGCCTTCTACCTTCCATTTCCGGTTCCAGTCCCCGCTTACTGGAACCCCTCTCCTTTACAAAACCTGATCCTAGGGATTGTCTTCGCCATTCAGCTGCGTTTTCTACAGCTACCAATAATAAATATGCTGCTAAAGGATATACCTCAAATCGCATATTTGCTCCTTATTCCGTTTACAAGGGCAAAGCTGCTTTCTCTTTGAGTCCTTGTCTTCCAACTTTCACCAAGTTGGATAGTGGGGCCGTTGTAGTTGATCGCCGTGGTTCAATGATGATGATTTTCATGCACTCCATTGGGGAGCGCAAGTATGACTGGGAGAACAAGCAGAGATTTGCTCTTTCGGCCACTGAAGTTGGCTCTTTGATAAGCATGGGCCCTCAGGATTCTTGTGAATTCTTCCATGACCCCTCCATGTTATCGAGTAATGCTGGTCAAGTGAGAAAAAGCTTATCAATTAAGCCTCATGCAAGCAGCAATGGCTACTTCGTGTCTTTGACTGTTGTCAACAACCTGCTAAATACCAAGGATTACTTGAGTGTCCCTGTCACGACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATCATGGGTTGGGACCGCATGACTCATCAGTCAGGGGGAACGGTTGGTCTTCAATCGAAAGTGGAACCACCTGCTTTAGACTTGGAATGGGATAAGTAA 714 0.4594 MLKLSRLLPSISGSSPRLLEPLSFTKPDPRDCLRHSAAFSTATNNKYAAKGYTSNRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGAVVVDRRGSMMMIFMHSIGERKYDWENKQRFALSATEVGSLISMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPHASSNGYFVSLTVVNNLLNTKDYLSVPVTTAEFAVMKTACSFALPHIMGWDRMTHQSGGTVGLQSKVEPPALDLEWDK* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1201 237 Pfam Whirly transcription factor 63 197 IPR013742 GO:0003697|GO:0006355|GO:0006952
Amo16g1201 237 Gene3D Transcriptional Coactivator Pc4; Chain A 47 217 IPR009044 GO:0003677|GO:0006355
Amo16g1201 237 SUPERFAMILY ssDNA-binding transcriptional regulator domain 54 216 IPR009044 GO:0003677|GO:0006355
Amo16g1201 237 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 28 237 IPR013742 GO:0003697|GO:0006355|GO:0006952
Amo16g1201 237 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 28 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1201 Amo-Chr16 20328715 20331559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1201 38 237 Whirly Transcription Factor Family AT1G71260 61.321 5.81e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Amo16g1201 Whirly 1.2e-54 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1201 - - gmx:100817863 353.984