Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1189 ATGGAACCTAATGACAACCAACTCAGCTCCTACTTCCACCAACAACAACAACAGCACCACCACCAGCAACAGCATCACCACCAGCAGCACCACCAGAGCGCCGCCGCGCCCTCCGGCGTGGGAGCCACGACGGCGGTTTCGCCGACCAACGGCCTTTTAGGGAACACCGATGGGGCCCACTCGCACATGTTGTACCCTCACACGGTGCCGTCGGCGGTGTCGTCGCAGCTGGTGGAGCCACCGGCGAAGAGGAAGAGAGGTCGGCCTCGCAAGTACGGTACTCCCGAGCAAGCCCTCGCTGCGAAGAAAGCCTCTACGACGTCATCTTCCGCCGCTCACTCCTTCTCCCCAACCTCCTCTTCCTCCGCCGCAAAGAAATCCCTTCCTCACCAGCCTCGTGCCTTGGGTGGTTCCTCGTTTCCTTCCTCCTCTTCCAAGAAATCGCACTCCTTTGGTTTAGGCAATGCAGGACAAGGCTTCACTCCGCATGTCATTGCTGTAGCTGCTGGTGAGGATGTTGGCCAAAAAATTATGTTATTTATGCAACAAAGTAAGCGTGAGATGTGCATTTTGTCTGCATCTGGTTCCATATCCAATGCCTCTCTTCGTCAGCCAGCAACCTCAGGAGGCAACGTTACATATGAGGGTCGGTTTGATATTATTTCTCTTACTGGTTCCTATGTTCGTAATGAACTTGGAAATCGATCTGGTGGTCTGAGTGTATGCTTATCTAATACTGATGGGCAAATAATTGGTGGTGGAGTTGGTGGACCCCTTAAAGCGGCTGGTCCAGTTCAGGTTATTGTCGGTACATTTTTTGTTGACTCCAAGAAGGATAGTGGTCCTGGTGCAAAAGGTGATGCCTCTGCTAGTAAGTTGCCGTCACCAGTTGGTGACTCGGTATCAAGCTTAGGTTACCGCCCAGTTGACTCTACTAGTGGAAATCCAATCCGGGGAAATGAAGAGCATCAAACTATGGGGGGAAGTCATTACATGATTCAACAGCTTGGTTTGCACATGACGCCTCCCCGGTCAACAGACTGGGGAAGCCATCCGGAATCAAGAAATTCCGGCTATGAGATGACAGGAAGAACAGGTCCGGGGGCCCACCAATCTCCAGAGAACGGGGGCTATGACCAGATCACTGATTGA 1152 0.526 MEPNDNQLSSYFHQQQQQHHHQQQHHHQQHHQSAAAPSGVGATTAVSPTNGLLGNTDGAHSHMLYPHTVPSAVSSQLVEPPAKRKRGRPRKYGTPEQALAAKKASTTSSSAAHSFSPTSSSSAAKKSLPHQPRALGGSSFPSSSSKKSHSFGLGNAGQGFTPHVIAVAAGEDVGQKIMLFMQQSKREMCILSASGSISNASLRQPATSGGNVTYEGRFDIISLTGSYVRNELGNRSGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFVDSKKDSGPGAKGDASASKLPSPVGDSVSSLGYRPVDSTSGNPIRGNEEHQTMGGSHYMIQQLGLHMTPPRSTDWGSHPESRNSGYEMTGRTGPGAHQSPENGGYDQITD* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1189 383 MobiDBLite consensus disorder prediction 278 324 - -
Amo16g1189 383 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 375 - -
Amo16g1189 383 MobiDBLite consensus disorder prediction 1 153 - -
Amo16g1189 383 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 375 IPR039605 GO:0003680
Amo16g1189 383 ProSiteProfiles PPC domain profile profile. 156 293 IPR005175 -
Amo16g1189 383 MobiDBLite consensus disorder prediction 347 361 - -
Amo16g1189 383 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 272 IPR005175 -
Amo16g1189 383 MobiDBLite consensus disorder prediction 29 56 - -
Amo16g1189 383 MobiDBLite consensus disorder prediction 1 18 - -
Amo16g1189 383 CDD DUF296 161 272 IPR005175 -
Amo16g1189 383 MobiDBLite consensus disorder prediction 136 153 - -
Amo16g1189 383 MobiDBLite consensus disorder prediction 100 127 - -
Amo16g1189 383 MobiDBLite consensus disorder prediction 341 383 - -
Amo16g1189 383 Gene3D - 162 283 - -
Amo16g1189 383 MobiDBLite consensus disorder prediction 305 324 - -
Amo16g1189 383 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1189 Amo-Chr16 20146169 20151570 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1189 57 380 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 50.000 2.30e-86 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1189 - - adu:107491998 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1189 16 20146169 20151570 Amo16g1189 16 20146169 20151570 ECH