Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1186 ATGGAAAGAGGAGTGTGTCCTATCCTGTTGTTGGTGCTGGTTTTTTCTCTTGTGCTCTCTGTTTATGCTATGGATGTTGAGTTTGGACCCTGCAATAATTGTGATGATGAGGAAGGGATTTGGAGCATCCAGAGCATCCTGGTTTGCCAAAAAGTCAGTGACTTCTTCATTGCCATTGCATATTTTTCCATACCCCTTGAGCTACTTTACTTCATTAGCTACTCCAATGTCCCATTCAAATTGGTCTTCCTTCAGTTCATTGCCTTCATTGTTCTCTGTGGGTTGACACATTTGCTCAATGCCTACACCTATTATGGCTCTCCCTCCTTCCAGCTTTTGATCTCTCTCACCGTCGCGAAATTCCTTACTGCTCTTGTGTCCTGTGCTACTGCAATCACCTTTCCTACTCTCATTCCCCTTCTTCTCAAGATCAAAGTGAGAGAGCTTTTCTTGAGGCAGAATGTGTTGGAACTGGGCCAAGAGGTTGGGATGATGAAGAAACAGAAGGAAGCGAGCTGGCATGTTCGAATGCTGACTCGCGAAATTAGGAAGTCTCTGGATAAGCACACTATCTTGTATTCCACCCTTGTTGAGCTTTCCAAGGCCTTGGATCTGCATAACTGTGCTGTGTGGATGCCCGACAATGACAGGCGAGAGATGCATTTGACCCATGAATTGAAACCGAGTTCGGCTAATCAATTAAAAATTTCTATTCCTATAAGTGATCCAGATGTGTTGGAGATAAGAAAGAGTAAGGGTGTGCAGATTTTGAGGCCTGATTCTGCATTGGGAGCTGCTAGTGGTGGTGAATATGGGGAGTCGGGTTCTGTAGCAGCTATCCGCATGCCGATACTTCATGTTTCCAATTTCAAAGGAGGGACACCGGAAATGGTTGATACATCTTATGCTATACTGGTTTTGGTTCTCCCAAATTTAAACTCAAGGGCTTGGAACCCCCATGAGATGGATATAGTGGAAGTAGTTGCTGATCAGGTTGCTGTAGCCTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTGATGAGGCAGAAACTTGCAGAGCAAAACCGAGCGCTGCAACAGGCTCAAAAGAATGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTCAGAAAGTCATGAGTAATGGAATGCGAAGGCCTATGCATTCAATCCTTGGCTTGCTTTCAATATTTCAAGAGGACAATCTAAGACCTGAACAGAAGATTATTATTGACACAATGTTGAGAGTTAGCAATGCACTTTCCAGTTTGATTAGTGATGTAATGGAGATTTCGGCAAATGACAAAGGAAGCTTTCGGTTAGAGATGAAACCTTTCGATCTGCATTCCATGATGAGGGAAGTTTCTTGCATTGCTAAGTGTTTGTGTGTACATAAAGGCTTTGGTCTTGAAATTGATGTCCACAAGGGTTTACCAGGGTTGGTTATAGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTGCACTTGATAGGTTATCTGTTGAACATGTATGATAAAGGGACTCTCATTTTTCGAGCATTTACTGAAAATGATAGTGGAAATAAGGATGATAAAGGTCTTGGAATATGGAGATCAAGTGTGCAACATGACTATGTATATGTAAAATTTAGTTTTCAGATAACGGGTATTACTTCCGAGTCAGATGTATTAAATTCAGCAAAACATTATTCTGGTAGAAGGCACTACAACAATGAACCTAATGAGGGCCTGAGCTTCAGCATGTGCAAAACGCTGGTGCAGATGATGCAAGGTAATATCTGGATGTCACCAAACTCGTCGGGTTTGGCTCAAGGCATGACACTTCTTCTCAAGTTTCAGCTAGGTCGACCCTCGGTTGGAAGATCCACATTTGCACTAAAAGATGCTCCAAACCCSCAGTTTAGAGGCCTYAAGGTTGTGTTGGCRGACGACGATAATGTAAACAGGACCGTGACAAAGAAGCTGCTCGAGAAGCTTGGTTGTCAAGTAACCGCTGTTTCATCAGGTTTCCAGTGCCTCAGTGCTGTAAGCGCCTCCGGCAACACATACAAAATTATCCTCTTAGATCTTCACATGCCTGAAATGGATGGCTTCGAAGTAGCTAGAAGGATCCGAAAGTTCCATAGCCGTAGTTGGCCCTTGATTATAGCTCTTACCGCGAGCGCGGAAGATGATGTGAGGGAGAAATGCATACAGGTGGGAATGCATGGATTGATTCGCAAACCGATCCTTCTTCAAGAGATAGCCGATGAACTCAGGACAGTGTTGCAACGTGCAGGTGAAAAATTGTGA 2292 0.4372 MERGVCPILLLVLVFSLVLSVYAMDVEFGPCNNCDDEEGIWSIQSILVCQKVSDFFIAIAYFSIPLELLYFISYSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGSPSFQLLISLTVAKFLTALVSCATAITFPTLIPLLLKIKVRELFLRQNVLELGQEVGMMKKQKEASWHVRMLTREIRKSLDKHTILYSTLVELSKALDLHNCAVWMPDNDRREMHLTHELKPSSANQLKISIPISDPDVLEIRKSKGVQILRPDSALGAASGGEYGESGSVAAIRMPILHVSNFKGGTPEMVDTSYAILVLVLPNLNSRAWNPHEMDIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQQAQKNAMMASQARSSFQKVMSNGMRRPMHSILGLLSIFQEDNLRPEQKIIIDTMLRVSNALSSLISDVMEISANDKGSFRLEMKPFDLHSMMREVSCIAKCLCVHKGFGLEIDVHKGLPGLVIGDEARSFQVILHLIGYLLNMYDKGTLIFRAFTENDSGNKDDKGLGIWRSSVQHDYVYVKFSFQITGITSESDVLNSAKHYSGRRHYNNEPNEGLSFSMCKTLVQMMQGNIWMSPNSSGLAQGMTLLLKFQLGRPSVGRSTFALKDAPNPQFRGLKVVLADDDNVNRTVTKKLLEKLGCQVTAVSSGFQCLSAVSASGNTYKIILLDLHMPEMDGFEVARRIRKFHSRSWPLIIALTASAEDDVREKCIQVGMHGLIRKPILLQEIADELRTVLQRAGEKL* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1186 763 ProSiteProfiles Response regulatory domain profile. 638 756 IPR001789 GO:0000160
Amo16g1186 763 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 441 598 IPR036890 -
Amo16g1186 763 SUPERFAMILY GAF domain-like 190 339 - -
Amo16g1186 763 SMART gaf_1 187 346 IPR003018 GO:0005515
Amo16g1186 763 PANTHER TWO-COMPONENT HISTIDINE KINASE 8 756 - -
Amo16g1186 763 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Amo16g1186 763 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 357 437 IPR036097 GO:0000155|GO:0007165
Amo16g1186 763 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Amo16g1186 763 Gene3D - 637 762 - -
Amo16g1186 763 CDD REC_ETR-like 637 752 - -
Amo16g1186 763 SUPERFAMILY CheY-like 633 758 IPR011006 -
Amo16g1186 763 Pfam Response regulator receiver domain 639 751 IPR001789 GO:0000160
Amo16g1186 763 Gene3D - 436 616 IPR036890 -
Amo16g1186 763 Coils Coil 342 372 - -
Amo16g1186 763 Pfam GAF domain 189 336 IPR003018 GO:0005515
Amo16g1186 763 ProSiteProfiles Histidine kinase domain profile. 379 616 IPR005467 -
Amo16g1186 763 PIRSF Ethylen_sen_hybr_HK 5 763 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Amo16g1186 763 PANTHER ETHYLENE RECEPTOR 8 756 - -
Amo16g1186 763 Gene3D - 338 435 - -
Amo16g1186 763 SMART REC_2 637 752 IPR001789 GO:0000160
Amo16g1186 763 Gene3D - 165 337 IPR029016 -
Amo16g1186 763 CDD HATPase_ETR2_ERS2-EIN4-like 478 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1186 Amo-Chr16 20056333 20061331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1186 25 761 Miscellaneous Gene Families AT3G04580 60.719 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo16g1186 GAF 4.2e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1186 K14509 - gmx:100805023 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1186 16 20056333 20061331 Amo19g2164 19 92212453 92216401 ECH
Amo16g1186 16 20056333 20061331 Amo16g1186 16 20056333 20061331 ECH