Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1175 ATGCTTCTATGCGAGGTTCTTGCACAGGGAAGTGGCGGTGATGCAGCGGAAAACTCCTCCACCGAAGAGGTGAACTCAACCACGGCGGCGCTGCAGCCACAACAACCATCTTACAGAGGGGTAAGAAGGAGGCCATGGGGAAAGTACGCGGCAGAGATAAGGGACTCGACGAGGAACGGCGAGAGGGTATGGTTGGGAACCTTTGATACGGCGGAGGAAGCTGCTTTGGCTTACGACCAAGCGGCATTGGCAAGTAGAGGATCAGTGGCGGTTTTGAACTTCCCGGCAGGGATGGTTGTTGAATCGCTAGAGAAGATGATGATGGAGTGTGGTGGGTTTAGTGAAGATTGTTCTCCGGTGTTGGAGCTGAAGAAGAAGCATTCCATGAAGAGGAAGATGGAGAACAGGGAGAAGAAACTGCTCATGATGATGAATACAAATAATAACAATCATCATAATCATGTCATGGTATTCCAGGATTTGGAATGGGGAATCCGGGTGGGGCAAAGCAGTTGTTACGCTCCCCGTTTTCAATGGGTGTTCTTGTGGGTGACTAAAGGTGGCACACGGCCAAATGATGACTATATATATGCAGTATGCTTAGTGATGTCAATTATCGTTGAATGTCTTCGCTCAATAAAGTAA 645 0.4868 MLLCEVLAQGSGGDAAENSSTEEVNSTTAALQPQQPSYRGVRRRPWGKYAAEIRDSTRNGERVWLGTFDTAEEAALAYDQAALASRGSVAVLNFPAGMVVESLEKMMMECGGFSEDCSPVLELKKKHSMKRKMENREKKLLMMMNTNNNNHHNHVMVFQDLEWGIRVGQSSCYAPRFQWVFLWVTKGGTRPNDDYIYAVCLVMSIIVECLRSIK* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1175 214 Pfam AP2 domain 36 87 IPR001471 GO:0003700|GO:0006355
Amo16g1175 214 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Amo16g1175 214 ProSiteProfiles AP2/ERF domain profile. 37 95 IPR001471 GO:0003700|GO:0006355
Amo16g1175 214 SMART rav1_2 37 101 IPR001471 GO:0003700|GO:0006355
Amo16g1175 214 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Amo16g1175 214 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Amo16g1175 214 PANTHER DNA-BINDING DOMAIN 16 162 IPR044808 GO:0003700|GO:0009873
Amo16g1175 214 MobiDBLite consensus disorder prediction 9 40 - -
Amo16g1175 214 SUPERFAMILY DNA-binding domain 37 96 IPR016177 GO:0003677
Amo16g1175 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 16 162 - -
Amo16g1175 214 CDD AP2 36 96 IPR001471 GO:0003700|GO:0006355
Amo16g1175 214 MobiDBLite consensus disorder prediction 13 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1175 Amo-Chr16 19939566 19941121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1175 18 161 AP2-EREBP Transcription Factor Family AT3G23240 50.676 5.61e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo16g1175 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1175 K14516 - sind:105163408 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1175 16 19939566 19941121 Amo16g1175 16 19939566 19941121 ECH