Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1163 AACAGAACAAATGCTAAAGGAATATCTAATAATGTGTACTTACTAGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACCTGAGGCCAGATATTAAAAGAGGGAAATTCAGCAAGGAAGAGGAAGAGGCYATTCTCAAACTACATGCAGTTCTTGGAAATAGGTGGTCTGCGATTGCAGCAAGATTACCGGGTCGTACAGATAATGAAATAAAGAACTTTTGGCACACTCATTTGAAGAAAAGGATTGAGAAAAGTGAAGTGCACAATAATGGCATCAATAGTAGTAAATATTCCTCGTGTTCCTCACAAATCATCACCATGCCAAGAGTAGTACCAGCAATTGCACCAAGTAGTGGTAGTGGTAGTGCTGCTTCTAGCTTCAATGATGGTTTATCCTCAACCTCAAGGAATAGATCAAGTTCATCACCAAATATTATTGCAGGACCAGGATTTTGCAGTGCAATAACATCCTCTTCTGATGATACTTCAGGTGAAACCATGGGAAATCATAACGATGGTTCCATTCAGCTCAGTGAAGAGATGGAATTTTGGTTCCACAATACATGGAGTACCAGGGCCAAGCTTTTCTGTTCTGCTGCTTCTGCAGCTGGAGCTGGAAGTTCCAGCTCCAATCCTGACGGTGACTTCAACCCTTACGAGGTTCTAGGTGTTAGTCCTATTGAAAGATTTGACATGATCAAGGCTGCATATGCGAAAAAGAAGAAGGAGGCTGAGATTAACGGCGACGAAGCTACTGCTTCCCGGTTGGAGAAGGCATATGACAAACTCATGATGGCTCAGTTGACTAATCGGAAAAAGGGTGTGACTTTTGGATCATTTAAGGTTTCGAAGGACATCAAGTATGCTGACAAGCAGCCAATTCTACCTTGGGGGCCAAGGTTTGCTAAATCAACTACAAATGATACACGCATCAACTTGGCAATATCTGCTGTTTTCACAGCTTGGATCCTTGTTAGGCGGAGTGCTGAATATAAACCTTTGCAATTTTTAGCATTTGCTTTTGTTTATAGGCTATTTGAGAAGTTAAAATCATTTGAATCTCCTGCAACCCGAACATATAATGAAGAAGGTGAGGATACTGGAGAAGGCCTGCGTATGGGAAAACGATTGCTTCGATCTCTGGCATTGGTGTTTGGTTGTGTAGCTGTGTCATCTGTGGGATACACTATCTTTTTGAACATAATTGAGTATGCAGGTGGTTTTATTCCCGCTGCCCTTTACAACAGCCAGGAGTTGGTAATCACCACTTCATCGGCGGTAATGCTTTATATTTTGGCAACTTATTATAGATAG 1329 0.4153 NRTNAKGISNNVYLLGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEEAILKLHAVLGNRWSAIAARLPGRTDNEIKNFWHTHLKKRIEKSEVHNNGINSSKYSSCSSQIITMPRVVPAIAPSSGSGSAASSFNDGLSSTSRNRSSSSPNIIAGPGFCSAITSSSDDTSGETMGNHNDGSIQLSEEMEFWFHNTWSTRAKLFCSAASAAGAGSSSSNPDGDFNPYEVLGVSPIERFDMIKAAYAKKKKEAEINGDEATASRLEKAYDKLMMAQLTNRKKGVTFGSFKVSKDIKYADKQPILPWGPRFAKSTTNDTRINLAISAVFTAWILVRRSAEYKPLQFLAFAFVYRLFEKLKSFESPATRTYNEEGEDTGEGLRMGKRLLRSLALVFGCVAVSSVGYTIFLNIIEYAGGFIPAALYNSQELVITTSSAVMLYILATYYR* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1163 442 SUPERFAMILY Chaperone J-domain 168 268 IPR036869 -
Amo16g1163 442 PANTHER - 187 442 IPR021788 -
Amo16g1163 442 MobiDBLite consensus disorder prediction 130 150 - -
Amo16g1163 442 CDD SANT 40 83 IPR001005 -
Amo16g1163 442 ProSiteProfiles Myb-like domain profile. 33 83 IPR001005 -
Amo16g1163 442 Pfam Protein CHAPERONE-LIKE PROTEIN OF POR1-like 243 351 IPR021788 -
Amo16g1163 442 Coils Coil 244 264 - -
Amo16g1163 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 87 IPR017930 -
Amo16g1163 442 SUPERFAMILY Homeodomain-like 19 91 IPR009057 -
Amo16g1163 442 Pfam Myb-like DNA-binding domain 38 83 IPR001005 -
Amo16g1163 442 PANTHER CHLOROPLAST J-LIKE DOMAIN 1 187 442 - -
Amo16g1163 442 Gene3D - 39 108 - -
Amo16g1163 442 Gene3D - 5 37 - -
Amo16g1163 442 SMART sant 37 85 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1163 Amo-Chr16 19746521 19751057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1163 14 190 MYB Transcription Factor Family AT1G06180 46.842 4.68e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo16g1163 CPP1-like 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1163 - - var:108343807 417.927