Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1153 ATGGCAAAAACTCCTTGTTGTGAGAGAATGGGTTTGAAGAAGGGACCCTGGACTGCTGAAGAAGATCAGATATTGACATCTTTCATTCATAGATATGGCCATGGAAACTGGCGTGCACTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACCTGAGGCCAGATATTAAAAGAGGGAAATTCAGCAAGGAAGAGGAAGAGGCCATTCTCAAACTACATGCAGTTCTTGGAAATAGGTGGTCTGCGATTGCAGCAAGATTACCGGGTCGTACAGATAATGAAATAAAGAACTTTTGGCACACTCATTTGAAGAAAAGGATTGAGAAAAGTGAAGTGCACAATAATGGCATCAATAGTAGTAAATATTCCTCGTGTTCCTCACAAATCATCACCATGCCAAGAGTAGTACCAGCAATTGCACCAAGTAGTGGTAGTGGTAGTGCTGCTTCTAGCTTCAATGATGGTTTATCCTCAACCTCAAGGAATAGATCAAGTTCATCACCAAATATTATTGCAGGACCAGGATTTTGCAGTGCAACAACATCCTCTTCTGATGATACTTCAGGTGAAACCATGGGAAATCATAACGATGGTTCCATTCAGCTCAGTGAAGAGATGGAATTTTGGTACAATATATTCATCAAATCAGGACAGCTATCTTAA 690 0.4072 MAKTPCCERMGLKKGPWTAEEDQILTSFIHRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEEAILKLHAVLGNRWSAIAARLPGRTDNEIKNFWHTHLKKRIEKSEVHNNGINSSKYSSCSSQIITMPRVVPAIAPSSGSGSAASSFNDGLSSTSRNRSSSSPNIIAGPGFCSATTSSSDDTSGETMGNHNDGSIQLSEEMEFWYNIFIKSGQLS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1153 229 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo16g1153 229 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo16g1153 229 Gene3D - 68 137 - -
Amo16g1153 229 CDD SANT 69 112 IPR001005 -
Amo16g1153 229 CDD SANT 16 61 IPR001005 -
Amo16g1153 229 Gene3D - 13 66 - -
Amo16g1153 229 PANTHER MYB TRANSCRIPTION FACTOR 1 227 - -
Amo16g1153 229 SMART sant 13 63 IPR001005 -
Amo16g1153 229 SMART sant 66 114 IPR001005 -
Amo16g1153 229 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 227 - -
Amo16g1153 229 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo16g1153 229 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo16g1153 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo16g1153 229 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Amo16g1153 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo16g1153 229 MobiDBLite consensus disorder prediction 156 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1153 Amo-Chr16 19692586 19694348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1153 1 220 MYB Transcription Factor Family AT1G06180 49.785 1.45e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo16g1153 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1153 K09422 - gmx:102663040 280.411