LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo16g1151	ATGGCTCCCAATCCAAGAGTTGTTCAGGCCTTTAATGCTATGAAGGCATTAGGAATTTCAGCTGAAGAGGTGAAGCCGGTGTTGGCAGAGTTGTTAAGAGTCTACGATAAAAATTGGGAACTTATTGAAGAGGACAATTATCGGACACTTGTAGATGCATACTTTGACTTCAAAGAAGATAAGGGAACAGATGCTAAGAAAAAAGTGTCTGTCAATTTTCATGCTCGAGAAAGACCAAAACAGAAGCTGCACTTGATAGATGATGATGATGATGATAACCAGGTTTTGTCAACAACAAATAAGTCGAGCCAAAAGTTATCCATTGCAGATAGGAAAACACCTCCAGGTAATTCTTCACAAGAAATCATTGAGCCATCTCAAGCTTCTAAGCAAGATAGCAAGCCCAGAACTAGTTCAGAAGCATCACATGCAAGGTTGATGAAGGTAGAAAGGGTTTCCAGTTCACCTTGCAACGCACCTAAATATAGAAAAACGTATTACGACATAGCACCATCTTCAGGGCACTCTGTTGATTATGAGAAAGAGCTAGTGAAACCCAGAACTAAGAAACCAAAGTTACAGACTCAGCCTATTTCAACAAATCATGACGGTGCTTTACAGATTTATGAGGAGCAGCTTTCTTCTGTCTCTCTAATGAAGCTACACATAGTAGGATTATTTGATGCTTCCTCATCATGCAATAATAATGCCACAACTAGCACGGGAAATATCACTATTGCTTCTTCACCCCGTGGAGAAGTTAAATTGTCTTTAAACTGCAACTCTGCCTTGGCTCAACCGGACTTCTGTAATCCTAATTTGGATACTGTGATGAAGTTCATGGAGGAGAAGTACCTTAGCTCTTGCATGACTCAGGATCCTCAGTTTTCAATGGTGAAGCTACTAAATGGTTTATGCAGGAGCTATCTGATGTTGGGACATAAAAAACGTTCGAATTTCAGGTCTTCTTCCAGCAACTTGGCAGTTACTCAAGATGAAAGGAGTTCCTCTCAGTTTATCAATGACATAACAAGAGGTTCAGAAGAGGTGAAAATCCCATTAATAGATGAAAATGGCAGTGAGGACTTGCCAAAATTTAATTATATACCGCAAAATATAATATACCAAAGTGCTAATGTAAATATTTCATTGGCTCGAATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCAACTGTCTTTCTGCTTCACTGCCTTGTGCATGTGCCCGTGAAACTGGTGGAGAGTTTGCTTACACTCCTGAAGGTGTGTTGAAAGAAGAGTTTCTTAAAGCTTGCATTTCCATGAAGAATGAACCTCAAGATCGTCATTTCGTGTATTGTCAAGAGTGCCCATTGGAGAAGTCTAAGAATGAGTTCATGCCCGAACAATGCAAAGGGCATATGGTTAGGAAGTTTATCAAAGAATGCTGGAGGAAATGTGGCTGTGACATGCGATGTGGAAATCGAGTAGTACAAAGAGGTATAAGATGCAAATTGCAGGTGTACATGACTCGTGAGGGAAAGGGCTGGGGCCTTAGAACACTTGAGGATTTGCCGAAGGGTACTTTTGTATGTGAATACGTTGGGGAAATATTAACCAATACAGAGTTATACGAAAGGAATGTGCACAGCAGTTGCAGCAATGACAGACACACATATCCCGTAACTCTTGATGCAGACTGGGGATCAGAAGGGGTCTTGAAAGATGAGGAAGCGCTTTGTTTAGATGCAACATATAATGGAAATGTTGGAAGGTTTATCAATCACAGATGCTTTGATGCAAATCTCATTGACATTCCTGTTGAAGTGGAGACTCCTGATCACCACTATTACCATCTTGCTTTCTTTACCACCCGAGATGTGAGAGCCAATGAGGAGTTGACGTGGGATTATGGTATTGACTTTGATGATCATGACCATCCTATTAAAGCATTTCAATGTTCTTGTGGAAGCGCTTTCTGCGGTGATAAGAAGAGAAAAGCCGAAGCAATACCTGCAGCTAGTAGAATAGGGAGTAAACAAATTTCTTGA	2034	0.4076	MAPNPRVVQAFNAMKALGISAEEVKPVLAELLRVYDKNWELIEEDNYRTLVDAYFDFKEDKGTDAKKKVSVNFHARERPKQKLHLIDDDDDDNQVLSTTNKSSQKLSIADRKTPPGNSSQEIIEPSQASKQDSKPRTSSEASHARLMKVERVSSSPCNAPKYRKTYYDIAPSSGHSVDYEKELVKPRTKKPKLQTQPISTNHDGALQIYEEQLSSVSLMKLHIVGLFDASSSCNNNATTSTGNITIASSPRGEVKLSLNCNSALAQPDFCNPNLDTVMKFMEEKYLSSCMTQDPQFSMVKLLNGLCRSYLMLGHKKRSNFRSSSSNLAVTQDERSSSQFINDITRGSEEVKIPLIDENGSEDLPKFNYIPQNIIYQSANVNISLARISDEGCCSDCSGNCLSASLPCACARETGGEFAYTPEGVLKEEFLKACISMKNEPQDRHFVYCQECPLEKSKNEFMPEQCKGHMVRKFIKECWRKCGCDMRCGNRVVQRGIRCKLQVYMTREGKGWGLRTLEDLPKGTFVCEYVGEILTNTELYERNVHSSCSNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVGRFINHRCFDANLIDIPVEVETPDHHYYHLAFFTTRDVRANEELTWDYGIDFDDHDHPIKAFQCSCGSAFCGDKKRKAEAIPAASRIGSKQIS*	678

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo16g1151	677	Pfam	Pre-SET motif	343	490	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Amo16g1151	677	ProSiteProfiles	Pre-SET domain profile.	396	495	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Amo16g1151	677	Gene3D	SET domain	343	658	IPR046341	-
	Amo16g1151	677	Pfam	SET domain	510	633	IPR001214	GO:0005515
	Amo16g1151	677	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	677	IPR025776	-
	Amo16g1151	677	CDD	SET_SETDB-like	364	633	-	-
	Amo16g1151	677	SMART	preset_2	340	482	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Amo16g1151	677	MobiDBLite	consensus disorder prediction	96	135	-	-
	Amo16g1151	677	SMART	set_7	498	639	IPR001214	GO:0005515
	Amo16g1151	677	MobiDBLite	consensus disorder prediction	86	144	-	-
	Amo16g1151	677	ProSiteProfiles	SET domain profile.	498	633	IPR001214	GO:0005515
	Amo16g1151	677	Gene3D	-	1	60	IPR043017	-
	Amo16g1151	677	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	663	-	-
	Amo16g1151	677	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN	1	663	-	-
	Amo16g1151	677	SUPERFAMILY	SET domain	350	655	IPR046341	-
	Amo16g1151	677	Pfam	Ubiquitin-binding WIYLD domain	6	59	IPR018848	GO:0018024

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo16g1151	Amo-Chr16	19622893	19629903	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo16g1151	474	633	C2H2 Transcription Factor Family	AT2G23740	43.478	2.72e-31	129

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Amo16g1151		Pre-SET	7e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo16g1151	-		-	gsj:114402909	852.818