Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1145 ATGCCAAATAACAGCACAAGTGGAGGTAAGAAGAGAAAACTCTGCCCACCAAAAGAACCCGAAGATTGGTGCTTTGAATGCAAGGATGGTGGAGAAGTCATTGTATGCGATCGCAGGAACTGTGTGAAGGTTTATCACTCCAACTGTGTTCCTGTTACTCCTGTGAAGGACAAATCTTGGATTTGTGCTTGGCATTATTGCTATGAATGCAAGGAGTCCGCAAAGTTTTATTGCCTTGGTTGTCCAAATGCTTTGTGCAAAGAGTGCTTGGCTTCCTCAGAATTTATCACTGTCAAGGGTGATAAAGGATTATGCTGCGACTGCGCGCCGCTAGTCAAAATTATCGAACAAAATTTGGAGCGGGACTCTCAGGGGAACAAGATAAGAGTGGATGGAAGAGATACATATGAGGGTCTATTCAAGGAATACTGGGAAATTATTAAGCTAAACGAAGGATTAACTAGTGATGATATCTCTGCTGCACAAACCAACTACAACAAAAAGGTTAAAAAATCTCCAGATCAAAGCAAAGTCATTGATTTAGATAAAGAAAGTCAGAATGACTCCATGTCATCGGACGGCGATGAAGTTTTTATGTATAAACACAACTCAACCAAAAGGAAGCAGTCCAGTTCACTGGAGTTTATGGGATGGGGATCGAAACCTCTCCTTAGCTTCCTTGCGTCCATTGGAAAATTTAGTACTGAACCATTGTCACAGTGGGGTATACGGACTCTCGTGTGTGAATACATTGAGAAGAACAATCTCTATCTCTCGCAAGATAAGAGGAAGTTCCTCCTTGATGAAATGCTGTTTTCTATATTCAGAAAAAAGGTTATGTCAAAAAATCAAATATATCCTCTATTGGAGCTTCACTTTGCTGAAAAGTCGGATGATAGAGATGGTGAAGAAAACAATTATGAAAGCATAAGCACTCCTCCTGACAACAAGGGTCTCAGTGATCAGACTTCATGTAGGAAAAGGAGATTGTCAAGCTCGAAAGGGAAACTTCTATTGGAAAAGAAGAATTTGTCTATCAAGCCTAGTCGTTTTGCATCCATAAGTTCCAGTAATATAAGACTTATTTACTTAAGACAAAGCTTGGTGCTAGAGTTATCTAAACAACTTGAAAATGTTATGGATAAGGTTGTTGGAGCCTTCGTTAGAGTTAAAATGGATTCCAGTGATTGTAAGCAGACAAGGTCTTACCAGCTTGTGAGAGTTACAGGTGTTGTATTGGAGGATGATGCTTATAGGAGAATTCTTTTGCTAGTTTCCTTCATGTCTAAAGCCATCCCTATCTCCGAGCTTTCTGATAATGACTTCACAGAGCAAGAATGTGAGGATTTGCGGCTAAAAGTGAAAGCCAAAATGCTGCAGAAACTAACTGTTGTGGAGCTTCAAGAAAAGGCAAAAAGTCTTCATGAGGATATAACAAAGCATTGGATCGCGACTCGACTAACCTATTTGCAAAATCAGATTGACCGTGCAAACCTAAGCGGAAGACAAAGAGAATATCCTTGTTCCCATTATTATATTTTTATTAAAAATAAATACATGAAATCTTAA 1569 0.3926 MPNNSTSGGKKRKLCPPKEPEDWCFECKDGGEVIVCDRRNCVKVYHSNCVPVTPVKDKSWICAWHYCYECKESAKFYCLGCPNALCKECLASSEFITVKGDKGLCCDCAPLVKIIEQNLERDSQGNKIRVDGRDTYEGLFKEYWEIIKLNEGLTSDDISAAQTNYNKKVKKSPDQSKVIDLDKESQNDSMSSDGDEVFMYKHNSTKRKQSSSLEFMGWGSKPLLSFLASIGKFSTEPLSQWGIRTLVCEYIEKNNLYLSQDKRKFLLDEMLFSIFRKKVMSKNQIYPLLELHFAEKSDDRDGEENNYESISTPPDNKGLSDQTSCRKRRLSSSKGKLLLEKKNLSIKPSRFASISSSNIRLIYLRQSLVLELSKQLENVMDKVVGAFVRVKMDSSDCKQTRSYQLVRVTGVVLEDDAYRRILLLVSFMSKAIPISELSDNDFTEQECEDLRLKVKAKMLQKLTVVELQEKAKSLHEDITKHWIATRLTYLQNQIDRANLSGRQREYPCSHYYIFIKNKYMKS* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1145 522 SMART PHD_3 23 66 IPR001965 -
Amo16g1145 522 Pfam Plus-3 domain 358 453 IPR004343 GO:0003677
Amo16g1145 522 SUPERFAMILY FYVE/PHD zinc finger 19 71 IPR011011 -
Amo16g1145 522 MobiDBLite consensus disorder prediction 300 325 - -
Amo16g1145 522 Pfam SWIB/MDM2 domain 223 293 IPR003121 -
Amo16g1145 522 PANTHER OS01G0884500 PROTEIN 17 508 IPR045894 -
Amo16g1145 522 CDD SWIB-MDM2_like 218 293 - -
Amo16g1145 522 MobiDBLite consensus disorder prediction 171 194 - -
Amo16g1145 522 SUPERFAMILY SWIB/MDM2 domain 206 295 IPR036885 -
Amo16g1145 522 Gene3D - 354 476 IPR036128 GO:0003677
Amo16g1145 522 ProSiteProfiles Plus3 domain profile. 353 479 IPR004343 GO:0003677
Amo16g1145 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 112 IPR013083 -
Amo16g1145 522 MobiDBLite consensus disorder prediction 171 190 - -
Amo16g1145 522 Gene3D SWIB/MDM2 domain 204 303 IPR036885 -
Amo16g1145 522 SUPERFAMILY Plus3-like 355 477 IPR036128 GO:0003677
Amo16g1145 522 PANTHER ZINC ION BINDING / DNA BINDING PROTEIN 17 508 - -
Amo16g1145 522 ProSiteProfiles SWIB/MDM2 domain profile. 212 295 IPR003121 -
Amo16g1145 522 SMART rtf1 353 456 IPR004343 GO:0003677
Amo16g1145 522 CDD PHD5_NSD 23 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1145 Amo-Chr16 19500665 19504873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1145 21 90 PHD Transcription Factor Family AT3G14980 33.333 2.17e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Amo16g1145 Plus-3 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1145 - - adu:107492011 852.047