Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1143 ATGGTTGTGACTGCTCCAGCCATTGCTATGCTACTTGTTGCTGTAATTTTCTTCTACTTGAAAAAATTTGCTTGCTCTTGGCGTTACCACCATAGACACAGAGTTGTGGCGAGTTTTCGAAGAGAAGCAGGATTTAACCAAGAGGATATAAGGAAAGTTGATAATAATATGAAAGGGTTACTTGCTGAAACAAAATTCCAAAAGCATCACCTGTGGTTTGATGATGAACTCATAGAAACACTCATTGGATACTCAACCAAGAACCAAACCAATGAAAGAAACGTATGTCATGCATCTTCAGCTCAGTTATTCCTTGTGGACCCTAGAAAATCCCAAAACACATCAATTGTGCTAAGCCCTCTTACACAAGAAGAAGAAGCCAAAATCATCCAATTCAGTGGAAATCCAGATAAACTTGCTCATGCTGATTCATTCCTCTACTGCATCCTCAAAGCGGTTCCAACAACATTTATTCACCTAAAAGCAATGCTTTTCAGATCAAATTATGATTGTGAAGCTGTTCAGCTTAAAGAAAAATTACAAACGCTTGAAAAGGGTTGCCAGGAAATGAGGGCTAGTGGCCTGTTACTGAAGTTTCTTGAGGCAATTCTCAAAGCTGAAAACCGGATGAATGCCGTAACTTACAGGGAAAATGCACAAGGCTTCAACCTAAGTGCTCTTAGGAAGCTTTCTGATGTTAAAAGCATTGATGGGAATACTAGTTTGCTTCACTTCATTGTAGAGAAGGTGGCTCAGTCAGGAGGAAGAAGAGAAGCTATAAATCAAAAGCATAACATTCCCAAAATAAATGGTATAAAGGATGAGTTATCTGAAGTAAAGAAAGCAACAATAATTGATCATCAGAATTTCATTAGTATCTTCTACACTCTCAATGCTCATGTTAGCAAAATTCGAGAGATTGTAACAAAATGCTGTGGCGACGACAATGAGAGAGGTGGATTTGTTAAGGAAATGAAAGGGTTTGTCGAGGAATGCGAGGAGGAGCTTAAATTTGTGAAAGATGAACATCTTAGGATCATGGAGCTTGGGAAGAAAACCAATGAGTATTATTATCTAGGAGGTGGAGGAAGATCAAACCCCTTTGAACTATTTCTTATTGCGAGAGATTTTGTTGACATGGTGGATGAGGTTTGCAGTGATCTCAGAAGGAAGATAGAAAAGAAGAATGTAGGAGGAGGAGAAGGTGCATCAAGAACACCTCTTTCACCCTCAAAGAAATCACCACTCAGGTTCCCAAAGTTTGATTTGCACTTTCTATCAAACATGTCAAGTGCAACATCATGTTCTAGCCTATCAGATGATGATTTCTGA 1332 0.3889 MVVTAPAIAMLLVAVIFFYLKKFACSWRYHHRHRVVASFRREAGFNQEDIRKVDNNMKGLLAETKFQKHHLWFDDELIETLIGYSTKNQTNERNVCHASSAQLFLVDPRKSQNTSIVLSPLTQEEEAKIIQFSGNPDKLAHADSFLYCILKAVPTTFIHLKAMLFRSNYDCEAVQLKEKLQTLEKGCQEMRASGLLLKFLEAILKAENRMNAVTYRENAQGFNLSALRKLSDVKSIDGNTSLLHFIVEKVAQSGGRREAINQKHNIPKINGIKDELSEVKKATIIDHQNFISIFYTLNAHVSKIREIVTKCCGDDNERGGFVKEMKGFVEECEEELKFVKDEHLRIMELGKKTNEYYYLGGGGRSNPFELFLIARDFVDMVDEVCSDLRRKIEKKNVGGGEGASRTPLSPSKKSPLRFPKFDLHFLSNMSSATSCSSLSDDDF* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1143 443 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 407 IPR015425 -
Amo16g1143 443 SUPERFAMILY Formin homology 2 domain (FH2 domain) 103 395 - -
Amo16g1143 443 PANTHER FORMIN-LIKE PROTEIN 71 121 - -
Amo16g1143 443 PANTHER FORMIN-LIKE PROTEIN 267 438 - -
Amo16g1143 443 PANTHER FORMIN-LIKE PROTEIN 122 266 - -
Amo16g1143 443 Coils Coil 166 193 - -
Amo16g1143 443 SMART it6_source 47 396 IPR015425 -
Amo16g1143 443 Pfam Formin Homology 2 Domain 122 381 IPR015425 -
Amo16g1143 443 PANTHER FORMIN-RELATED 122 266 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo16g1143 443 PANTHER FORMIN-RELATED 71 121 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo16g1143 443 PANTHER FORMIN-RELATED 267 438 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo16g1143 443 MobiDBLite consensus disorder prediction 396 415 - -
Amo16g1143 443 Coils Coil 322 342 - -
Amo16g1143 443 Gene3D Formin, FH2 domain 120 398 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1143 Amo-Chr16 19484437 19486145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1143 52 440 FH2 protein (formin) Gene Family AT1G70140 37.037 7.94e-89 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1143 - - aip:107618940 607.06