Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1133 ATGGTTATGGCGAAGGTGAAGAGGCAGAAGCTGCAAGCATGCATCACGTGCCCACTCTGCCACAAACTCCTCCGAGACGCCACCACCATCTCCCTCTGCCTTCACACTTTTTGCAGGAAGTGCATATATAAGAAGCTTTCAGATGATGAGATGGATTGTTGTCCAGTATGTTATGTTGATCTCGGATGCCTTCCATTCCAAAAACTCAGGCCAGACCACAATTTGCAAGATATTAGGGCCAAAATATTCCCTTTTAGGCGAAGAAAAATCGATGCTCTTCAAGTTGTTTTGCCTGCAAAGAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAATGCTCCCAAGGTTTCAAATCAGACTGGCTTCACAGCCAAGAGAACAAAATCTGGCATAAGAAAGGCAGCTGAAGAAACATATGGTGAAGATAATCTGTACATTGTTGTAGGGTTCTTTTGTAGCTGA 462 0.4372 MVMAKVKRQKLQACITCPLCHKLLRDATTISLCLHTFCRKCIYKKLSDDEMDCCPVCYVDLGCLPFQKLRPDHNLQDIRAKIFPFRRRKIDALQVVLPAKRKERSLSSLVVNAPKVSNQTGFTAKRTKSGIRKAAEETYGEDNLYIVVGFFCS* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1133 153 SUPERFAMILY RING/U-box 11 82 - -
Amo16g1133 153 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 136 IPR044807 GO:0004842
Amo16g1133 153 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 3 136 - -
Amo16g1133 153 SMART ring_2 17 57 IPR001841 -
Amo16g1133 153 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Amo16g1133 153 Pfam Zinc finger, C3HC4 type (RING finger) 17 57 - -
Amo16g1133 153 ProSiteProfiles Zinc finger RING-type profile. 17 57 IPR001841 -
Amo16g1133 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 129 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1133 Amo-Chr16 19052425 19054162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1133 2 144 C3H Transcription Factor Family AT2G30580 58.125 2.04e-60 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1133 K16277 - rcu:8269087 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1133 16 19052425 19054162 Amo19g2081 19 81513611 81519057 ECH
Amo16g1133 16 19052425 19054162 Amo16g1133 16 19052425 19054162 ECH