Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1112 ATGGGGTGTGTGATTAGCAGGGAGGTGTCTTCTGGAATAATCGCAGAGGTGAAAGAGGAGAAGAGTTTCGGTGCTGATTCTAAGAGCAATAATAAGGTTGATGGAGTCGCGGAAGAGGCTCAGAATCAGAATCGGAATCACAATGGTGGTAACCACAGGGAAGAGAAGAGTGGCAGCGAAGTTCAGAAGCCGAGGGGAGAAAGGAGAAGATCGAAGAAACCGAATCCGCGGCTAAGCAATCCTCCCAAGCATTTAAGGGGTGAGCAGGTTGCGGCTGGCTGGCCACCCTGGCTCACCGCCGTGTGCGGCGAAGCGCTTAACGGCTGGATTCCCCGAAAGGCTGACACATTTGAGAAGATTGATAAGATCGGGCAAGGAACATATAGTAATGTRTACAAAGCTAAAGACATGATGACAGGCAAAATTGTTGCTCTAAAGAAGGTTCGATTTGATAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTCTTATTTTGCGGAGRTTGGATCATCCAAATGTTGTAAAGTTGCAAGGCTTAGTTACATCAAGGATGTCCTGCAGTCTGTATTTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGTTGCRAGCCCACGAATCAGGTTCACGGAACCTCAGGTCAAATGTTACATGCATCAACTGCTATCTGGACTTGAGCATTGTCATAAGCGTCGTGTACTTCACCGSGATATTAAAGGATCAAATCTTCTCATTGACAATGAAGGAATACTTAAGATTGCTGACTTTGGACTGGCATCTTTGTTCGATCCAAACCATAAGCATCCCATGACTAGTCGAGTRGTAACTCTTTGGTACCGGCCCCCAGAATTGCTTCTTGGTGCCACCGATTATGGTGTGGGTATAGACCTATGGAGCGCCGGATGCATTTTAGGAGAGTTATTGGCTGGAAAGCCAATTATGCCGGGTCGTACAGAGGTGGAGCAACTGCATAAGATATACAAACTATGTGGTTCACCTTCTGATGAATATTGGAAGAAGTCGAAGTTGCCTAAYGCCACCTTGTTTAAGCCTCGAGAGCCATACAAGAGATGCCTAAGAGAGACATTTAAAGATTTTCCACCTTCTGCACTACCCCTTATCGAAAGTCTTCTGGCATTTGATCCTGCCGAACGGAAAACTGCCTCAGATGCTTTGCGAAGTGAGTTCTTCACCACAGAGCCATATGCTTGTGATCCTTCAAGTCTTCCAAAATATCCTCCAAGCAAGGAAATGGATGCTAGACGGCAGGACGAAGAGGCCAGAAGAATAAGGGCTGCAAGCAAAGCTCAGGCTAATGGTCCAAGGAAGCATCGCATGCGTGATCGTGCCGTGAAAGCTATTCCTGCTCCTGAAGCCAATGCTGAGATTCAATCCAACATTGATAGAAGGCGTCTAATAACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCACCGCCACATCAAGATGGACAACTTGGATTTCCATTGGGATCTTCCCATCGTATTGATCCAGATACTGTTCCTATTGATGTCTCCTTCACTTCAACAACGTCGTATATTTATTCAAAGGAACCATTCCAAGCGTGGTCAGGTCCYATAGGTAATGCTGCTGCTGAAATTGGAGTGCCAAAAAACAAGAGACACACCGCAACTGATGCATTGGATTTATCAAAACCACATAAAGGTTCACACAAGGATAAAGTTAAAGGAAAGAAAACCATAGCTTAG 1746 0.4502 MGCVISREVSSGIIAEVKEEKSFGADSKSNNKVDGVAEEAQNQNRNHNGGNHREEKSGSEVQKPRGERRRSKKPNPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDMMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMVHDLAGLVASPRIRFTEPQVKCYMHQLLSGLEHCHKRRVLHRDIKGSNLLIDNEGILKIADFGLASLFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGIDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCLRETFKDFPPSALPLIESLLAFDPAERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDARRQDEEARRIRAASKAQANGPRKHRMRDRAVKAIPAPEANAEIQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHRIDPDTVPIDVSFTSTTSYIYSKEPFQAWSGPIGNAAAEIGVPKNKRHTATDALDLSKPHKGSHKDKVKGKKTIA* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1112 581 MobiDBLite consensus disorder prediction 419 436 - -
Amo16g1112 581 MobiDBLite consensus disorder prediction 48 67 - -
Amo16g1112 581 Gene3D Phosphorylase Kinase; domain 1 104 199 - -
Amo16g1112 581 SMART serkin_6 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1112 581 MobiDBLite consensus disorder prediction 551 568 - -
Amo16g1112 581 MobiDBLite consensus disorder prediction 409 451 - -
Amo16g1112 581 Pfam Protein kinase domain 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1112 581 CDD STKc_CDK9_like 117 401 - -
Amo16g1112 581 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Amo16g1112 581 SUPERFAMILY Protein kinase-like (PK-like) 111 408 IPR011009 -
Amo16g1112 581 Gene3D Transferase(Phosphotransferase) domain 1 200 441 - -
Amo16g1112 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Amo16g1112 581 MobiDBLite consensus disorder prediction 15 89 - -
Amo16g1112 581 PANTHER CELL DIVISION PROTEIN KINASE 48 554 - -
Amo16g1112 581 MobiDBLite consensus disorder prediction 550 581 - -
Amo16g1112 581 ProSiteProfiles Protein kinase domain profile. 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1112 581 PANTHER OS01G0367700 PROTEIN 48 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1112 Amo-Chr16 18369241 18373540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1112 109 441 Core Cell Cycle Gene Families AT5G10270 52.722 7.70e-122 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo16g1112 Pkinase 2.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1112 K08819 - gmx:100786837 1002.28