Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1090 ATGTCATCTCTGCAACCGAACGTCGATTCTACAAATTCGGAAGCGATGCAACGATCCAATCCCAAGAAGCGCCGGAAAATTGGACACAGCAATTCCCTCAGCCTCGTTCCATGGAGATCCGAGACGCAACAGCGGATCTACTCTTCCAAGCTCGCAGAAGCTCTCCGCCACGTCATCCATCGGAACCCTCCGTCTCCGCCGGCAAAGTCTAGTGCCGGTCGAGAGGTTCGCGAGACCGCCGACCGAGTCCTCGCTTCCACTGCAAAAGGCCGGACTCGTTGGAGCCGCGCTATCCTTGCTAGTCCACTCAACCGGTGGAAGCTCCGGCGGATGCACAAGAAGGTTCACAAGGCCTCCACCGGATTGCCGAAGAAGTCGCCGGAGACTCGCCGGAGATTACCGGTGGTGCAGAAGAAAGCGCGCGTTCTCGGCCGGTTAGTCCCCGGCTGCCGGAAGCTCACGTTCCCGAACCTTCTAGAAGAAGCCACAGACTACATCTCGGCGTTGGAGATGCAGGTGAGAGCCATGACGGCACTCACGGAGTTACTCACCGGCGGCGGCTCCCTCGCCTCGGCTTGA 579 0.5941 MSSLQPNVDSTNSEAMQRSNPKKRRKIGHSNSLSLVPWRSETQQRIYSSKLAEALRHVIHRNPPSPPAKSSAGREVRETADRVLASTAKGRTRWSRAILASPLNRWKLRRMHKKVHKASTGLPKKSPETRRRLPVVQKKARVLGRLVPGCRKLTFPNLLEEATDYISALEMQVRAMTALTELLTGGGSLASA* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1090 192 MobiDBLite consensus disorder prediction 1 35 - -
Amo16g1090 192 CDD bHLH_AtIBH1_like 130 180 IPR044549 GO:0006355
Amo16g1090 192 MobiDBLite consensus disorder prediction 59 78 - -
Amo16g1090 192 MobiDBLite consensus disorder prediction 1 17 - -
Amo16g1090 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Amo16g1090 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 184 IPR036638 GO:0046983
Amo16g1090 192 PANTHER TRANSCRIPTION FACTOR BHLH149 15 185 - -
Amo16g1090 192 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 15 185 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1090 Amo-Chr16 17770075 17771146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1090 1 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 45.361 2.38e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1090 - - aprc:113873135 218.779