Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1074 ATGGCGTCTGTTGGTATGGCACCAACATCAGGCGTGAGAGAATCAGGTGGCGGCGTTGATAGATTGCCGGAAGAGATGAACGATATGAAAATTAGGGATGATAAGGAAATGGAAGCTACAGTTGTTGATGGCAATGGAACGGAGACCGGCCATATCATTGTAACTACTATTGGTGGTAGAAATGGTCAACCAAAGCAGACTATAAGTTACATGGCAGAGCGGGTTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTAGCTATCAAAAAGGTTCTTCAAGATAAGAGGTATAAGAATCGGGAGCTTCAGACAATGCGTCTGCTTGACCACCCAAATGTTGTCTCTTTGAAGCATTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAATTTGGTACTAGAGTATGTTCCTGAAACAGTTAGCCGTGTGATCAAACATTACAACAAGTTGAGCCAAAGGATGCCACTAATATATGTGAAACTCTATACGTACCAGATCTTTAGGGCACTATCTTATATACATCGCTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAGTCAATCCACATACCCACCAGGTTAAATTATGTGACTTTGGGAGTGCAAAAGTCTTGGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTTATATTTGGAGCCACTGAATATACCACAGCTATTGATGTTTGGTCTGTTGGTTGCGTATTGGCTGAGCTTCTGCTTGGACAGCCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAAGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATATTCCATAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTCTCAAGACTACTACAATACTCACCTAATCTGCGTTGCTCAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGATCCAAATGCTCGCTTACCAAATGGTCGTTTCCTTCCACCATTATTCAATTTCAAAGCTCATGAACTGAAGGGGGTTCCAGCCGAGGTATTGGTGAAATTGATTCCAGAGTATGCGAGGAAGCAATGCCCGTTTCTCGGCTTGTGA 1221 0.4259 MASVGMAPTSGVRESGGGVDRLPEEMNDMKIRDDKEMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVSRVIKHYNKLSQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCSALDALTHPFFDELRDPNARLPNGRFLPPLFNFKAHELKGVPAEVLVKLIPEYARKQCPFLGL* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1074 406 CDD STKc_GSK3 65 357 IPR039192 -
Amo16g1074 406 Gene3D Phosphorylase Kinase; domain 1 54 149 - -
Amo16g1074 406 ProSitePatterns Protein kinases ATP-binding region signature. 76 100 IPR017441 GO:0005524
Amo16g1074 406 Gene3D Transferase(Phosphotransferase) domain 1 150 398 - -
Amo16g1074 406 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1074 406 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1074 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Amo16g1074 406 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 404 - -
Amo16g1074 406 Pfam Protein kinase domain 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1074 406 SUPERFAMILY Protein kinase-like (PK-like) 69 379 IPR011009 -
Amo16g1074 406 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 404 - -
Amo16g1074 406 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1074 Amo-Chr16 17471756 17478837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1074 74 359 MAP Kinase Gene Family AT3G59790 35.034 4.19e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Amo16g1074 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1074 K00924 - gmx:100780226 808.135