Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1057 ATGTGTATGATCTCATCAAGTGTATCAATGCTGGTCCAGAGTATAAGGTGTGAAAGCTCAAAGTACGTGTCATTAGACTTTGCTCACTTTGCAAATTCTGGGGTGAAGGCACCTATTGAGATGGTTGTCCTTGATGAAAAGGGGGATACAATTCAATGCTCTATTAAAGGCATATTTGTTCCTATCTTCGATGGTCTACTCGCTGAGAGCAACGTGTACGTGGTCACTAATTTTGCAATTGCTTTAAATACCATCAAGTTCAAATATACTAGACACGAATTTAGAATCAACTTCAAGAGGGACACGATTGTGCGTTCGGTACAAGACTCTTCAGTTCCATTGAACGGATTCAATTTTATTCCGTTCAAAAAAAATCATACAGAGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCCTCTAAGGGTAACTTGGTCGAGTTCACACGGGACGGGAAGCCGTCAAGTTATATCACGATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAAGGTAACGTTATGGCAGACTTTGGCTTTTAACTTGCTCAAATATTTGGAGGAACACCCGTGTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTATAGTGGGGTCATGGGTGTTTCCAACATAAACTACAATTCGAAACTGTTTATCAATGTTGAGTTTTCATCTGCCAGGAATTTCTTTACAAAGGTGAACAAATTGGATCCTGTTGACGGACAAGGCATAATGCCGCTGGTCTGTGATCAACCTGTTTCAATTGAGGAAGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCTGAGATAAAGGAGCATAATCAGGATGCTGTATTTGTTACTACCGGGACAATTAAGGAAGTTGAGACCGAGTTTGGTTGGTGGTACAAAGGATGTAAGAAGTTTCGTCATGGCTTAAGGGAACTTGAGAAAAGATATTTCTGTCCCAATTGCGTTGAAGACTACGGGTTCTATGTGCTAAGGTATGACTCACGATACTTCTTTAACATTGACACACTACATACTCTTTGTCTAAGAAAATAA 1071 0.394 MCMISSSVSMLVQSIRCESSKYVSLDFAHFANSGVKAPIEMVVLDEKGDTIQCSIKGIFVPIFDGLLAESNVYVVTNFAIALNTIKFKYTRHEFRINFKRDTIVRSVQDSSVPLNGFNFIPFKKNHTESKEDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIELDDLEGGQKLKVTLWQTLAFNLLKYLEEHPCLTYVVILQMGKMKFYSGVMGVSNINYNSKLFINVEFSSARNFFTKVNKLDPVDGQGIMPLVCDQPVSIEEDFLRLSVYKTIAEIKEHNQDAVFVTTGTIKEVETEFGWWYKGCKKFRHGLRELEKRYFCPNCVEDYGFYVLRYDSRYFFNIDTLHTLCLRK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1057 356 CDD RPA1_DBD_A_like 39 104 - -
Amo16g1057 356 CDD RPA1_DBD_B_like 137 228 - -
Amo16g1057 356 SUPERFAMILY Nucleic acid-binding proteins 117 238 IPR012340 -
Amo16g1057 356 SUPERFAMILY Nucleic acid-binding proteins 273 338 IPR012340 -
Amo16g1057 356 Gene3D - 268 347 IPR012340 -
Amo16g1057 356 Gene3D - 21 110 IPR012340 -
Amo16g1057 356 PANTHER REPLICATION FACTOR A 1, RFA1 39 311 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo16g1057 356 Gene3D - 111 245 IPR012340 -
Amo16g1057 356 Pfam Domain of unknown function DUF223 40 123 IPR003871 -
Amo16g1057 356 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 39 311 - -
Amo16g1057 356 SUPERFAMILY Nucleic acid-binding proteins 38 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1057 Amo-Chr16 17141543 17143698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1057 43 282 Core DNA Replication Machinery Family AT4G19130 23.108 1.37e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1057 - - adu:107477146 553.518