Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1056 ATGGGCGGAGGTGGACCGAACGCGGAGGCACAGTATTCGACGGCCAAGACCTCCGTGTGGTGGGACATAGAGAACTGCCACGTTCCTAAAGGCTGCGATCCCCACGCCATCGCTCAGAACATCAGCTCTGCACTGGTCCGCATGAATTACTGTGGTCCCGTCTCCGTCTCTGCCTACGGCGACACCACTCGTATCCCCGCCTCTGTACAGCACGCTCTCTCCAGCACCGGCATCTCCCTCAACCATGTCCCCGCTGGCGTTAAAGATGCTAGCGACAAGAAGATTCTTGTTGACATGCTGTTTTGGGCAGTGGACAATCCCGCACCTGCTAATTATTTATTAATTTCTGGCGACAGAGACTTCTCTAATGCTCTCCATCAACTGCGGATGAGAAGATATAATATTCTTCTTGCGCAACCTCAGAAAGCATCTGCACCACTAGTAGCAGCTGCTAAGAGTGTATGGCTCTGGACTAGTCTTTTAGCTGGAGGGCCTCCTCTAACTAATGGCGAATCACAACAACTTGGTAATAATAGCCTTGTAACAAGTTCCGACACCTTAACAATTCCAGTCACTAGTGTCGCTCAGACACAGCCACAGGCTGATTCCTACACCGAAGTGCATGTAGGAAATCAGAAGTTTCCAAATGGAGGAGGAAGGGGATACGATCCTAGGTATCAGGGGAAAACAAATTGGAGAAACTCGGGTCAGACAAATGGACCCAAGGCCATGAATCCACCGCCAGTTGGGCATCAAGATAGTCGTAATAATATAAACTCTTATCGACCTGGCAACTTCAATCCAAATGTTTCTTCAAGTGGACCTGCTCCAAATTTTATTCGTGGCAATACTGAACAGTTATGGAACAATAGCAATAATATACAGGGAAATCATCAAAATCCTTATTCACAGCCTCCTTTAAGACCAAACAGTTTCCCGCTGCAACCTCCTTTTGCATCGAATAATTCTTACCCTCCAAGTACCCATACTTTTGCAAATTCACCATTGCCACCGAGGACTGGTGTCCCCAGCTTCACTGCAGTTCCACCACCAAATGTGCCTGAAATTGGCAATCTGAACATTTCTGGATATCCCAATGGTGTTCATAATCCACGTCCTGTTAAGCAACGCAGTGGGGAATTGAAGCAGAATCCTAACAATAATGCTCCACTTCCGGTAACATCAACTGTTGAACAAAATGGACATATGGTACTTAGCAATAGCACGCAACATTTACAAGGCTATTCAAATGGAAATGGTCCAGACCATCAACTTGCATCATCGACGGGTAATAATAACCATTCTGGTAATGGCATGTGGGGATCTCCAGGTTGCCCTAAACCGTCTGAATATGTCCAAGGCCTTATAGGGGTTGTTTTACTAGCCTTGAATTCACTAAAAAATGAGAAGATTATGCCAACAGAGGCAAATATAACTGATTGCATTCGATATGGAGATCCCAGGCACCGCAACACTGATGTTAAGAAAGCTTTGGAGAGTGCTATTGAGCAGCAGATGGTGGTGAAACAGAATTTAGGTGCTTTGCAGCTGTATGTTGGTAAGAATGATAAACTTTGGAAGTGCATAAATCCTATAGCTGGTAATCCTAAGCAGCACTCAAAAGAAACCTGGGATGAAGTTCAAAAGTTTCTGACAACTTCTTCAGGAAGATCAGCATTGATGGGTACTCAGTGCAAGTATGAAGCAGGTATAGTCATAAAGAATTTGTGCTTTAAGGAACTTTCTTTGGGTGATGTGCTTCAAATATTAAACATGTTGATTACTCATAAAAAATGGATTGTGCATCCTCAGTCTGGCTGGCAACCACTTAATATTACTCTTCCTGAGACTAGCCCCAATTCAGGGGCTGTAGCAAGCATATAA 1884 0.4485 MGGGGPNAEAQYSTAKTSVWWDIENCHVPKGCDPHAIAQNISSALVRMNYCGPVSVSAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLTNGESQQLGNNSLVTSSDTLTIPVTSVAQTQPQADSYTEVHVGNQKFPNGGGRGYDPRYQGKTNWRNSGQTNGPKAMNPPPVGHQDSRNNINSYRPGNFNPNVSSSGPAPNFIRGNTEQLWNNSNNIQGNHQNPYSQPPLRPNSFPLQPPFASNNSYPPSTHTFANSPLPPRTGVPSFTAVPPPNVPEIGNLNISGYPNGVHNPRPVKQRSGELKQNPNNNAPLPVTSTVEQNGHMVLSNSTQHLQGYSNGNGPDHQLASSTGNNNHSGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNEKIMPTEANITDCIRYGDPRHRNTDVKKALESAIEQQMVVKQNLGALQLYVGKNDKLWKCINPIAGNPKQHSKETWDEVQKFLTTSSGRSALMGTQCKYEAGIVIKNLCFKELSLGDVLQILNMLITHKKWIVHPQSGWQPLNITLPETSPNSGAVASI* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1056 627 CDD PIN_limkain_b1_N_like 16 140 - -
Amo16g1056 627 Gene3D - 7 159 - -
Amo16g1056 627 MobiDBLite consensus disorder prediction 410 439 - -
Amo16g1056 627 MobiDBLite consensus disorder prediction 410 444 - -
Amo16g1056 627 MobiDBLite consensus disorder prediction 314 340 - -
Amo16g1056 627 Pfam NYN domain 16 152 IPR021139 GO:0004540
Amo16g1056 627 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 2 611 - -
Amo16g1056 627 MobiDBLite consensus disorder prediction 209 342 - -
Amo16g1056 627 MobiDBLite consensus disorder prediction 250 305 - -
Amo16g1056 627 MobiDBLite consensus disorder prediction 228 242 - -
Amo16g1056 627 MobiDBLite consensus disorder prediction 363 394 - -
Amo16g1056 627 PANTHER LIMKAIN B LKAP 2 611 IPR024768 GO:0005777|GO:0010468|GO:1903231
Amo16g1056 627 MobiDBLite consensus disorder prediction 377 394 - -
Amo16g1056 627 Pfam OST-HTH Associated domain 564 613 IPR025677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1056 Amo-Chr16 17121716 17125847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1056 8 199 C2H2 Transcription Factor Family AT5G61190 71.282 5.23e-86 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1056 - - gmx:100794608 1036.94